myRT

myRT report for GCA_902833905.1_Paraburkholderia_tuberum_LMG_21444

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Seq: CADFGP010000002.1 TPA_asm: Paraburkholderia tuberum strain LMG 21444 genome assembly, contig: B_tuberum_BCC1610_ERS785070_SC_contig000002, whole genome shotgun sequence (264528 bp)
Overview 1 RT 1: 234188-239573 bp Neighborhood of RT #1 [234188, 239638] DDE_Tnp_ISL3 Rve RVT-GII GIIM Rve PLN02942 Feature: gene Location: 234188-234841 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 234443-234761 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 234443-234761 bp Feature: gene Location: 235490-236017 bp Feature: domain Description: Rve Location: 235520-235949 bp Feature: domain Description: Rve Location: 235520-235949 bp Feature: gene Location: 236070-237167 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 236127-236781 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2361 27-236781 bp Feature: domain Description: GIIM Note: maturase Location: 236862-237084 bp Feature: domain Description: GIIM Note: maturase Location: 236862-237084 bp Feature: gene Location: 237718-238119 bp Feature: domain Description: Rve Location: 237784-238018 bp Feature: domain Description: Rve Location: 237784-23801 8 bp Feature: gene Location: 238181-239638 bp Feature: domain Description: PLN02942 Location: 238190-239573 bp Feature: domain Description: PLN02942 Location: 2381 90-239573 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_ISL3 (pfam01610), Rve (COG3316), RVT-GII, GIIM (pfam08388), PLN02942 (dihydropyrimidinase)

Seq: CADFGP010000008.1 TPA_asm: Paraburkholderia tuberum strain LMG 21444 genome assembly, contig: B_tuberum_BCC1610_ERS785070_SC_contig000008, whole genome shotgun sequence (228106 bp)
Overview 1 RT 1: 135411-144302 bp Neighborhood of RT #1 [135411, 144302] Zn_Tnp_IS91 Y2_Tnp Phage_int_SAM_4 INT_IntI_C RVT-GII GIIM PinE Zn_ribbon_recom HTH_17 HTH_17 RVT-GII Feature: gene Location: 135411-136631 bp Feature: domain Description: Zn_Tnp_IS91 Location: 135441-135717 bp Feature: domain Description: Zn_Tnp_IS91 Location: 135441-135717 bp Feature: domain Description: Y2_Tnp Location: 135843-136401 bp Feature: domain Description: Y2 _Tnp Location: 135843-136401 bp Feature: gene Location: 136640-137518 bp Feature: domain Description: Phage_int_SAM_4 Location: 136652-136898 bp Feature: domain Description: Phage_int_SAM_4 Location: 136652 -136898 bp Feature: domain Description: INT_IntI_C Location: 136934-137423 bp Feature: domain Description: INT_IntI_C Location: 136934-13742 3 bp Feature: gene Location: 138550-139317 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 138559-138961 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 138559-138961 bp Feature: domain Description: GIIM Note: maturase Location: 139030-139240 bp Feature: domain Description: GIIM Note: maturase Location: 139030-1392 40 bp Feature: gene Location: 139273-139482 bp Feature: gene Location: 139666-139830 bp Feature: gene Location: 139823-142042 bp Feature: domain Description: PinE Location: 139871-140459 bp Feature: domain Description: PinE Location: 139871-140459 bp Feature: domain Description: Zn_ribbon_recom Location: 140825-140990 bp Feature: domain Description: Zn_ribbon_recom Location: 14082 5-140990 bp Feature: domain Description: HTH_17 Location: 141704-141824 bp Feature: domain Description: HTH_17 Location: 141704-14182 4 bp Feature: domain Description: HTH_17 Location: 141893-141998 bp Feature: domain Description: HTH_17 Location: 141893-141998 bp Feature: gene Location: 142057-142545 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 142306-142537 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 142 306-142 537 bp Feature: gene Location: 142783-143334 bp Feature: gene Location: 144057-144302 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Zn_Tnp_IS91 (pfam14319), Y2_Tnp (pfam04986), Phage_int_SAM_4 (pfam13495), INT_IntI_C (cd01193), RVT-GII, GIIM (pfam08388), PinE (COG1961), Zn_ribbon_recom (pfam13408), HTH_17 (pfam12728)

Seq: CADFGP010000029.1 TPA_asm: Paraburkholderia tuberum strain LMG 21444 genome assembly, contig: B_tuberum_BCC1610_ERS785070_SC_contig000029, whole genome shotgun sequence (102173 bp)
Overview 1 RT 1: 99272-101992 bp Neighborhood of RT #1 [99272, 102090] AraC_binding AraC group_II_RT_mat Acetyltransf_1 RVT-GII GIIM Feature: gene Location: 99272-100294 bp Feature: domain Description: AraC_binding Location: 99500-99830 bp Feature: domain Description: AraC_binding Location: 99500-9983 0 bp Feature: domain Description: AraC Location: 99884-100199 bp Feature: domain Description: AraC Location: 99884-100199 bp Feature: gene Location: 100342-101196 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 100468-100618 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 100468-100618 bp Feature: domain Description: Acetyltransf_1 Location: 100888-101134 bp Feature: domain Description: Acetyltransf_1 Location: 100888-10113 4 bp Feature: gene Location: 101347-102090 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 101359-101677 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1013 59-101677 bp Feature: domain Description: GIIM Note: maturase Location: 101782-101992 bp Feature: domain Description: GIIM Note: maturase Location: 101782-101992 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AraC_binding (pfam02311), AraC (COG2207), group_II_RT_mat (TIGR04416), Acetyltransf_1 (pfam00583), RVT-GII, GIIM (pfam08388)

Seq: CADFGP010000033.1 TPA_asm: Paraburkholderia tuberum strain LMG 21444 genome assembly, contig: B_tuberum_BCC1610_ERS785070_SC_contig000033, whole genome shotgun sequence (93135 bp)
Overview 1 RT 1: 43784-47998 bp Neighborhood of RT #1 [43784, 48015] T3SC_IA_ShcM-like RVT-GII GIIM KfrA_N xerC Feature: gene Location: 43784-43954 bp Feature: gene Location: 43968-44432 bp Feature: domain Description: T3SC_IA_ShcM-like Location: 44040-44394 bp Feature: domain Description: T3SC_IA_ShcM-like Location: 4 4 04 0-4 4 394 bp Feature: gene Location: 44699-45577 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44702-45068 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 4 702-4 5068 bp Feature: domain Description: GIIM Note: maturase Location: 45122-45353 bp Feature: domain Description: GIIM Note: maturase Location: 4 5122-4 5353 bp Feature: gene Location: 45638-46672 bp Feature: domain Description: KfrA_N Location: 45743-46076 bp Feature: domain Description: KfrA_N Location: 4 574 3-4 6076 bp Feature: gene Location: 46816-48015 bp Feature: domain Description: xerC Location: 46999-47998 bp Feature: domain Description: xerC Location: 4 6999-4 7998 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT T3SC_IA_ShcM-like (cd17020), RVT-GII, GIIM (pfam08388), KfrA_N (pfam11740), xerC (PRK01287)

Seq: CADFGP010000040.1 TPA_asm: Paraburkholderia tuberum strain LMG 21444 genome assembly, contig: B_tuberum_BCC1610_ERS785070_SC_contig000040, whole genome shotgun sequence (72114 bp)
Overview 1 RT 1: 70073-71858 bp Neighborhood of RT #1 [70073, 71929] RVT-GII GIIM Feature: gene Location: 70073-70249 bp Feature: gene Location: 70253-70426 bp Feature: gene Location: 70661-71929 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 70910-71573 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 70910-715 73 bp Feature: domain Description: GIIM Note: maturase Location: 71642-71858 bp Feature: domain Description: GIIM Note: maturase Location: 71642-7185 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: CADFGP010000053.1 TPA_asm: Paraburkholderia tuberum strain LMG 21444 genome assembly, contig: B_tuberum_BCC1610_ERS785070_SC_contig000053, whole genome shotgun sequence (48042 bp)
Overview 1 RT 1: 44276-47473 bp Neighborhood of RT #1 [44276, 47877] COG3547 RVT_N RVT-GII GIIM Feature: gene Location: 44276-44488 bp Feature: gene Location: 44504-45430 bp Feature: domain Description: COG3547 Location: 44516-45383 bp Feature: domain Description: COG3547 Location: 44516 -45383 bp Feature: gene Location: 46219-47877 bp Feature: domain Description: RVT_N Location: 46264-46507 bp Feature: domain Description: RVT_N Location: 46 26 4-46 507 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46552-47188 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46 552-47188 bp Feature: domain Description: GIIM Note: maturase Location: 47239-47473 bp Feature: domain Description: GIIM Note: maturase Location: 47239-47473 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: CADFGP010000070.1 TPA_asm: Paraburkholderia tuberum strain LMG 21444 genome assembly, contig: B_tuberum_BCC1610_ERS785070_SC_contig000070, whole genome shotgun sequence (34125 bp)
Overview 1 RT 1: 26850-29794 bp Neighborhood of RT #1 [26850, 29826] RVT-GII ParE Feature: gene Location: 26850-27140 bp Feature: gene Location: 27314-27481 bp Feature: gene Location: 27505-28473 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28111-28432 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28111-28432 bp Feature: gene Location: 28489-29361 bp Feature: gene Location: 29506-29826 bp Feature: domain Description: ParE Location: 29515-29794 bp Feature: domain Description: ParE Location: 29515-297 94 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, ParE (COG3668)

Seq: CADFGP010000102.1 TPA_asm: Paraburkholderia tuberum strain LMG 21444 genome assembly, contig: B_tuberum_BCC1610_ERS785070_SC_contig000102, whole genome shotgun sequence (13708 bp)
Overview 1 RT 1: 11528-13488 bp Neighborhood of RT #1 [11528, 13679] PRK00756 FixJ RVT-GII Feature: gene Location: 11528-12079 bp Feature: domain Description: PRK00756 Location: 11534-12077 bp Feature: domain Description: PRK00756 Location: 11534-12077 bp Feature: gene Location: 12157-13158 bp Feature: domain Description: FixJ Location: 12970-13084 bp Feature: domain Description: FixJ Location: 12970-1308 4 bp Feature: gene Location: 13353-13679 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13371-13488 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13371-1348 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK00756 (acyltransferase NodA; Provisional), FixJ (COG4566), RVT-GII

Seq: CADFGP010000109.1 TPA_asm: Paraburkholderia tuberum strain LMG 21444 genome assembly, contig: B_tuberum_BCC1610_ERS785070_SC_contig000109, whole genome shotgun sequence (11931 bp)
Overview 1 RT 1: 1-2087 bp Neighborhood of RT #1 [1, 2087] RVT-GII Feature: gene Location: 1-990 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 337-955 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 337-9 55 bp Feature: gene Location: 1143-1355 bp Feature: gene Location: 1746-2087 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: CADFGP010000157.1 TPA_asm: Paraburkholderia tuberum strain LMG 21444 genome assembly, contig: B_tuberum_BCC1610_ERS785070_SC_contig000157, whole genome shotgun sequence (1816 bp)
Overview 1 RT 1: 139-1813 bp Neighborhood of RT #1 [139, 1813] RVT-GII Feature: gene Location: 139-735 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 415-715 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 415-715 bp Feature: gene Location: 1067-1393 bp Feature: gene Location: 1469-1813 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII