myRT

myRT report for GCA_902859375.1_PBIO881

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Seq: CADIIT010000006.1 Escherichia coli strain PBIO881 genome assembly, contig: contig00006, whole genome shotgun sequence (216412 bp)
Overview 1 RT 1: 188662-191727 bp Neighborhood of RT #1 [188662, 191727] RVT-GII GIIM RVT-GII Feature: gene Location: 188662-188832 bp Feature: gene Location: 188970-189149 bp Feature: gene Location: 189248-189769 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 189254-189536 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 89254-1 89536 bp Feature: domain Description: GIIM Note: maturase Location: 189584-189764 bp Feature: domain Description: GIIM Note: maturase Location: 1 89584-1 89764 bp Feature: gene Location: 189797-190336 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 190127-190205 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 901 27-1 90205 bp Feature: gene Location: 190367-190564 bp Feature: gene Location: 190822-191727 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: CADIIT010000010.1 Escherichia coli strain PBIO881 genome assembly, contig: contig00010, whole genome shotgun sequence (166131 bp)
Overview 1 RT 1: 22258-28501 bp Neighborhood of RT #1 [22258, 28638] Phage_integrase RVT-UG5 nitrilase AbiEi_3_N AbiEi_3 AbiEii Feature: gene Location: 22258-22524 bp Feature: domain Description: Phage_integrase Location: 22324-22420 bp Feature: domain Description: Phage_integrase Location: 2 2 32 4-2 2 42 0 bp Feature: gene Location: 22607-23077 bp Feature: gene Location: 23424-26633 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 23952-24441 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 2 3952 -2 4441 bp Feature: domain Description: nitrilase Location: 25947-26544 bp Feature: domain Description: nitrilase Location: 2 5947-2 6544 bp Feature: gene Location: 26928-27731 bp Feature: domain Description: AbiEi_3_N Location: 26961-27222 bp Feature: domain Description: AbiEi_3_N Location: 2 6961-2 72 2 2 bp Feature: domain Description: AbiEi_3 Location: 27234-27690 bp Feature: domain Description: AbiEi_3 Location: 2 72 34-2 7690 bp Feature: gene Location: 27718-28638 bp Feature: domain Description: AbiEii Location: 27760-28501 bp Feature: domain Description: AbiEii Location: 2 7760-2 8501 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_integrase (pfam00589), RVT-UG5, nitrilase (cl11424), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), AbiEii (pfam08843)

Seq: CADIIT010000019.1 Escherichia coli strain PBIO881 genome assembly, contig: contig00019, whole genome shotgun sequence (102129 bp)
Overview 1 RT 1: 83121-86529 bp Neighborhood of RT #1 [83121, 86663] Dps RVT-GII GIIM IstB_IS21_ATP IstB_IS21 COG4584 COG4584 Feature: gene Location: 83121-83285 bp Feature: domain Description: Dps Location: 83124-83283 bp Feature: domain Description: Dps Location: 83 124-83 283 bp Feature: gene Location: 83446-83613 bp Feature: gene Location: 83639-84688 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83657-84311 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83 657-843 11 bp Feature: domain Description: GIIM Note: maturase Location: 84389-84614 bp Feature: domain Description: GIIM Note: maturase Location: 843 89-84614 bp Feature: gene Location: 84830-85585 bp Feature: domain Description: IstB_IS21_ATP Location: 84902-84986 bp Feature: domain Description: IstB_IS21_ATP Location: 84902-84986 bp Feature: domain Description: IstB_IS21 Location: 84995-85520 bp Feature: domain Description: IstB_IS21 Location: 84995-85520 bp Feature: gene Location: 85602-86663 bp Feature: domain Description: COG4584 Location: 85608-86001 bp Feature: domain Description: COG4584 Location: 85608-86001 bp Feature: domain Description: COG4584 Location: 86115-86529 bp Feature: domain Description: COG4584 Location: 86115-86529 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Dps (COG0783), RVT-GII, GIIM (pfam08388), IstB_IS21_ATP (pfam08483), IstB_IS21 (pfam01695), COG4584 (Transposase )

Seq: CADIIT010000055.1 Escherichia coli strain PBIO881 genome assembly, contig: contig00055, whole genome shotgun sequence (13287 bp)
Overview 1 RT 1: 1880-5180 bp Neighborhood of RT #1 [1880, 5221] RVT-GII GIIM DDE_Tnp_IS66 Feature: gene Location: 1880-2557 bp Feature: gene Location: 2852-3049 bp Feature: gene Location: 3075-4307 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3276-3930 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3276-3930 bp Feature: domain Description: GIIM Note: maturase Location: 4008-4230 bp Feature: domain Description: GIIM Note: maturase Location: 4 008-4 230 bp Feature: gene Location: 4302-4721 bp Feature: gene Location: 4769-5221 bp Feature: domain Description: DDE_Tnp_IS66 Location: 4799-5180 bp Feature: domain Description: DDE_Tnp_IS66 Location: 4 799-5180 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66 (pfam03050)

Seq: CADIIT010000084.1 Escherichia coli strain PBIO881 genome assembly, contig: contig00084, whole genome shotgun sequence (2256 bp)
Overview 1 RT 1: 3-1919 bp Neighborhood of RT #1 [3, 2164] RVT-GII GIIM Feature: gene Location: 3-347 bp Feature: gene Location: 641-2164 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 914-1646 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 914-1646 bp Feature: domain Description: GIIM Note: maturase Location: 1721-1919 bp Feature: domain Description: GIIM Note: maturase Location: 1721-1919 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)