myRT

myRT report for GCA_902859435.1_PBIO878

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Seq: CADIIU010000023.1 Escherichia coli strain PBIO878 genome assembly, contig: contig00023, whole genome shotgun sequence (43244 bp)
Overview 1 RT 1: 30855-36125 bp Neighborhood of RT #1 [30855, 36184] RVT-UG7 PRK09692 Phage_int_SAM_5 INT_C_like_1 Feature: gene Location: 30855-30995 bp Feature: gene Location: 31105-31845 bp Feature: gene Location: 31842-33470 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 32250-32679 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 32250-32679 bp Feature: gene Location: 33463-34647 bp Feature: domain Description: PRK09692 Location: 33469-34624 bp Feature: domain Description: PRK09692 Location: 33469-34624 bp Feature: gene Location: 34970-36184 bp Feature: domain Description: Phage_int_SAM_5 Location: 35291-35525 bp Feature: domain Description: Phage_int_SAM_5 Location: 35291 -35525 bp Feature: domain Description: INT_C_like_1 Location: 35621-36125 bp Feature: domain Description: INT_C_like_1 Location: 35621 -361 25 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG7, PRK09692 (Integrase; provisional), Phage_int_SAM_5 (pfam13102), INT_C_like_1 (cd01184)

Seq: CADIIU010000035.1 Escherichia coli strain PBIO878 genome assembly, contig: contig00035, whole genome shotgun sequence (16097 bp)
Overview 1 RT 1: 1-5109 bp Neighborhood of RT #1 [1, 5129] HTH_38 Tra8 PHA02517 RVT-GII GIIM PHA02517 HTH_ARAC Feature: gene Location: 1-696 bp Feature: domain Description: HTH_38 Location: 10-124 bp Feature: domain Description: HTH_38 Location: 10-12 4 bp Feature: domain Description: Tra8 Location: 160-697 bp Feature: domain Description: Tra8 Location: 160-697 bp Feature: gene Location: 827-1252 bp Feature: domain Description: PHA02517 Location: 851-1187 bp Feature: domain Description: PHA02 517 Location: 851-1187 bp Feature: gene Location: 1844-3367 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2117-2849 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 117-2 849 bp Feature: domain Description: GIIM Note: maturase Location: 2924-3122 bp Feature: domain Description: GIIM Note: maturase Location: 2 92 4-312 2 bp Feature: gene Location: 3520-3936 bp Feature: domain Description: PHA02517 Location: 3523-3925 bp Feature: domain Description: PHA02 517 Location: 352 3-392 5 bp Feature: gene Location: 4320-5129 bp Feature: domain Description: HTH_ARAC Location: 4866-5109 bp Feature: domain Description: HTH_ARAC Location: 4866-5109 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_38 (pfam13936), Tra8 (COG2826), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), HTH_ARAC (smart00342)

Seq: CADIIU010000041.1 Escherichia coli strain PBIO878 genome assembly, contig: contig00041, whole genome shotgun sequence (7719 bp)
Overview 1 RT 1: 651-5288 bp Neighborhood of RT #1 [651, 5288] PRK13889 RVT-Retrons HTH_XRE Feature: gene Location: 651-1088 bp Feature: gene Location: 2029-3531 bp Feature: domain Description: PRK13889 Location: 2032-2611 bp Feature: domain Description: PRK13 889 Location: 203 2-2611 bp Feature: gene Location: 3608-4708 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3749-4301 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3 749-43 01 bp Feature: gene Location: 4701-4982 bp Feature: domain Description: HTH_XRE Location: 4716-4881 bp Feature: domain Description: HTH_XRE Location: 4716-4881 bp Feature: gene Location: 5073-5288 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13889 (conjugal transfer relaxase TraA; Provisional), RVT-Retrons, HTH_XRE (smart00530)