myRT

myRT report for GCA_902859575.1_HaCicuneomaculata_2628_v1.0

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Seq: CADIJH010000012.1 Candidatus Hamiltonella defensa strain HaCicuneomaculata-2628 genome assembly, contig: NODE_12_length_50251_cov_437.033, whole genome shotgun sequence (50251 bp)
Overview 1 RT 1: 19675-21815 bp 2 RT 2: 49289-50128 bp Neighborhood of RT #1 [19675, 21823] DDE_3 HTH_23 HTH_33 DDE_3 RVT-GII PRK09956 gldA Neighborhood of RT #2 [49289, 50145] RVT_N RVT-GII Feature: gene Location: 19675-19929 bp Feature: domain Description: DDE_3 Location: 19699-19819 bp Feature: domain Description: DDE_3 Location: 1 9699-1 981 9 bp Feature: gene Location: 19959-20627 bp Feature: domain Description: HTH_23 Location: 19962-20064 bp Feature: domain Description: HTH_23 Location: 1 9962-20064 bp Feature: domain Description: HTH_33 Location: 20172-20337 bp Feature: domain Description: HTH_33 Location: 201 72-20337 bp Feature: domain Description: DDE_3 Location: 20379-20607 bp Feature: domain Description: DDE_3 Location: 20379-20607 bp Feature: gene Location: 20701-20919 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20749-20848 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20749-20848 bp Feature: gene Location: 21028-21420 bp Feature: domain Description: PRK09956 Location: 21115-21412 bp Feature: domain Description: PRK09956 Location: 21 1 1 5-21 41 2 bp Feature: gene Location: 21605-21823 bp Feature: domain Description: gldA Location: 21617-21815 bp Feature: domain Description: gldA Location: 21 61 7-21 81 5 bp Feature: gene Location: 49289-49699 bp Feature: domain Description: RVT_N Location: 49337-49577 bp Feature: domain Description: RVT_N Location: 49337-49577 bp Feature: gene Location: 49736-49891 bp Feature: gene Location: 49921-50145 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49924-50128 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49924-501 28 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_3 (pfam13358), HTH_23 (pfam13384), HTH_33 (pfam13592), RVT-GII, PRK09956 (ISNCY family transposase), gldA (PRK09423), RVT_N (pfam13655)

Seq: CADIJH010000023.1 Candidatus Hamiltonella defensa strain HaCicuneomaculata-2628 genome assembly, contig: NODE_23_length_18953_cov_333.82, whole genome shotgun sequence (18953 bp)
Overview 1 RT 1: 16373-18941 bp Neighborhood of RT #1 [16373, 18952] DUF1493 RVT-GII INT_Lambda_C Feature: gene Location: 16373-16600 bp Feature: domain Description: DUF1493 Location: 16385-16559 bp Feature: domain Description: DUF1493 Location: 16385-16559 bp Feature: gene Location: 17359-17541 bp Feature: gene Location: 17538-18041 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17781-17976 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17781-17976 bp Feature: gene Location: 18215-18952 bp Feature: domain Description: INT_Lambda_C Location: 18440-18941 bp Feature: domain Description: INT_Lambda_C Location: 18440-18941 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1493 (pfam07377), RVT-GII, INT_Lambda_C (cd00800)

Seq: CADIJH010000061.1 Candidatus Hamiltonella defensa strain HaCicuneomaculata-2628 genome assembly, contig: NODE_61_length_2952_cov_294.724, whole genome shotgun sequence (2952 bp)
Overview 1 RT 1: 1623-2779 bp Neighborhood of RT #1 [1623, 2871] RVT_N RVT-GII RVT-GII Feature: gene Location: 1623-1793 bp Feature: gene Location: 1795-1986 bp Feature: gene Location: 1997-2491 bp Feature: domain Description: RVT_N Location: 2048-2291 bp Feature: domain Description: RVT_N Location: 2048-2291 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2336-2438 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23 3 6-243 8 bp Feature: gene Location: 2605-2871 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2611-2779 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2611-2779 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII

Seq: CADIJH010000072.1 Candidatus Hamiltonella defensa strain HaCicuneomaculata-2628 genome assembly, contig: NODE_72_length_1921_cov_1026.19, whole genome shotgun sequence (1921 bp)
Overview 1 RT 1: 617-1718 bp Neighborhood of RT #1 [617, 1810] RVT-GII GIIM Feature: gene Location: 617-1810 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 803-1430 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 803-14 30 bp Feature: domain Description: GIIM Note: maturase Location: 1505-1718 bp Feature: domain Description: GIIM Note: maturase Location: 1505-1718 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: CADIJH010000075.1 Candidatus Hamiltonella defensa strain HaCicuneomaculata-2628 genome assembly, contig: NODE_75_length_1591_cov_406.033, whole genome shotgun sequence (1591 bp)
Overview 1 RT 1: 1-1198 bp Neighborhood of RT #1 [1, 1413] DUF4096 DDE_Tnp_Tn3 RVT-GII GIIM Feature: gene Location: 1-174 bp Feature: domain Description: DUF4096 Location: 49-172 bp Feature: domain Description: DUF4096 Location: 49-172 bp Feature: gene Location: 218-433 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 230-347 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 230-347 bp Feature: gene Location: 808-1413 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 814-904 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 814-904 bp Feature: domain Description: GIIM Note: maturase Location: 967-1198 bp Feature: domain Description: GIIM Note: maturase Location: 967-1198 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4096 (pfam13340), DDE_Tnp_Tn3 (pfam01526), RVT-GII, GIIM (pfam08388)

Seq: CADIJH010000082.1 Candidatus Hamiltonella defensa strain HaCicuneomaculata-2628 genome assembly, contig: NODE_82_length_1356_cov_417.102, whole genome shotgun sequence (1356 bp)
Overview 1 RT 1: 138-1125 bp Neighborhood of RT #1 [138, 1178] RVT-GII GIIM HNH Transposase_31 Feature: gene Location: 138-1178 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 144-234 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 144-234 bp Feature: domain Description: GIIM Note: maturase Location: 306-537 bp Feature: domain Description: GIIM Note: maturase Location: 306 -537 bp Feature: domain Description: HNH Note: nucleases Location: 768-906 bp Feature: domain Description: HNH Note: nucleases Location: 76 8-906 bp Feature: domain Description: Transposase_31 Location: 1008-1125 bp Feature: domain Description: Transposase_31 Location: 1008-1125 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HNH (pfam01844), Transposase_31 (pfam04754)