myRT

myRT report for GCA_902859755.1_HaCinara_sp_3046_v1.0

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Seq: CADIJJ010000031.1 Candidatus Hamiltonella defensa strain HaCiwatanabei-3293 genome assembly, contig: NODE_31_length_19314_cov_271.955, whole genome shotgun sequence (19314 bp)
Overview 1 RT 1: 11675-13815 bp Neighborhood of RT #1 [11675, 13823] DDE_3 HTH_23 HTH_33 DDE_3 RVT-GII PRK09956 gldA Feature: gene Location: 11675-11929 bp Feature: domain Description: DDE_3 Location: 11699-11819 bp Feature: domain Description: DDE_3 Location: 1 1 699-1 1 81 9 bp Feature: gene Location: 11959-12627 bp Feature: domain Description: HTH_23 Location: 11962-12064 bp Feature: domain Description: HTH_23 Location: 1 1 962-1 2064 bp Feature: domain Description: HTH_33 Location: 12172-12337 bp Feature: domain Description: HTH_33 Location: 1 21 72-1 2337 bp Feature: domain Description: DDE_3 Location: 12379-12607 bp Feature: domain Description: DDE_3 Location: 1 2379-1 2607 bp Feature: gene Location: 12701-12919 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12749-12848 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 2749-1 2848 bp Feature: gene Location: 13028-13420 bp Feature: domain Description: PRK09956 Location: 13115-13412 bp Feature: domain Description: PRK09956 Location: 1 31 1 5-1 341 2 bp Feature: gene Location: 13605-13823 bp Feature: domain Description: gldA Location: 13617-13815 bp Feature: domain Description: gldA Location: 1 361 7-1 381 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_3 (pfam13358), HTH_23 (pfam13384), HTH_33 (pfam13592), RVT-GII, PRK09956 (ISNCY family transposase), gldA (PRK09423)

Seq: CADIJJ010000044.1 Candidatus Hamiltonella defensa strain HaCiwatanabei-3293 genome assembly, contig: NODE_44_length_11778_cov_53.5485, whole genome shotgun sequence (11778 bp)
Overview 1 RT 1: 1-3771 bp Neighborhood of RT #1 [1, 3785] PRK09857 RVT_N RVT-GII GIIM HNHc PRK09857 Feature: gene Location: 1-153 bp Feature: gene Location: 513-881 bp Feature: domain Description: PRK09857 Location: 525-858 bp Feature: domain Description: PRK09857 Location: 52 5-858 bp Feature: gene Location: 958-2634 bp Feature: domain Description: RVT_N Location: 1009-1243 bp Feature: domain Description: RVT_N Location: 1009-12 43 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1297-1942 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 97-1942 bp Feature: domain Description: GIIM Note: maturase Location: 1996-2227 bp Feature: domain Description: GIIM Note: maturase Location: 1996-2 2 2 7 bp Feature: domain Description: HNHc Note: nucleases Location: 2440-2599 bp Feature: domain Description: HNHc Note: nucleases Location: 2 440-2 599 bp Feature: gene Location: 2631-2792 bp Feature: gene Location: 3222-3785 bp Feature: domain Description: PRK09857 Location: 3225-3771 bp Feature: domain Description: PRK09857 Location: 32 2 5-3771 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09857 (recombination-promoting nuclease RpnA), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: CADIJJ010000092.1 Candidatus Hamiltonella defensa strain HaCiwatanabei-3293 genome assembly, contig: NODE_92_length_3253_cov_238.711, whole genome shotgun sequence (3253 bp)
Overview 1 RT 1: 2-3079 bp Neighborhood of RT #1 [2, 3132] RVT-GII GIIM RVT-GII GIIM HNHc Transposase_31 Feature: gene Location: 2-172 bp Feature: gene Location: 616-1929 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 922-1549 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 922-1549 bp Feature: domain Description: GIIM Note: maturase Location: 1624-1837 bp Feature: domain Description: GIIM Note: maturase Location: 1624-183 7 bp Feature: gene Location: 2092-3132 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2098-2188 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2098-2188 bp Feature: domain Description: GIIM Note: maturase Location: 2260-2491 bp Feature: domain Description: GIIM Note: maturase Location: 2260-2491 bp Feature: domain Description: HNHc Note: nucleases Location: 2689-2854 bp Feature: domain Description: HNHc Note: nucleases Location: 2689-2854 bp Feature: domain Description: Transposase_31 Location: 2962-3079 bp Feature: domain Description: Transposase_3 1 Location: 2962-3 079 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HNHc (smart00507), Transposase_31 (pfam04754)

Seq: CADIJJ010000119.1 Candidatus Hamiltonella defensa strain HaCiwatanabei-3293 genome assembly, contig: NODE_119_length_2073_cov_298.434, whole genome shotgun sequence (2073 bp)
Overview 1 RT 1: 142-1985 bp Neighborhood of RT #1 [142, 2071] RVT_N RVT-GII Transposase_31 HimA Feature: gene Location: 142-966 bp Feature: domain Description: RVT_N Location: 190-424 bp Feature: domain Description: RVT_N Location: 190-4 24 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 484-934 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 84 -934 bp Feature: gene Location: 1513-1791 bp Feature: domain Description: Transposase_31 Location: 1531-1759 bp Feature: domain Description: Transposase_31 Location: 1531-1759 bp Feature: gene Location: 1796-2071 bp Feature: domain Description: HimA Location: 1799-1985 bp Feature: domain Description: HimA Location: 1799-1985 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, Transposase_31 (pfam04754), HimA (COG0776)