myRT

myRT report for GCA_902859775.1_LMG_27174

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Seq: CADIJZ010000027.1 Paraburkholderia rhynchosiae strain LMG 27174 genome assembly, contig: 27, whole genome shotgun sequence (101566 bp)
Overview 1 RT 1: 20599-23670 bp Neighborhood of RT #1 [20599, 23670] HNH_3 RVT-DGRs Avd_like Feature: gene Location: 20599-20847 bp Feature: gene Location: 20834-21481 bp Ori: CAB3730398.1 Feature: domain Description: HNH_3 Location: 21260-21389 bp Feature: domain Description: HNH_3 Location: 21 260-21 389 bp Feature: gene Location: 21478-22827 bp Ori: CAB3730412.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 21910-22597 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 21 91 0-22597 bp Feature: gene Location: 22820-23194 bp Ori: CAB3730421.1 Feature: domain Description: Avd_like Location: 22847-23153 bp Feature: domain Description: Avd_like Location: 22847-231 53 bp Feature: gene Location: 23212-23670 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HNH_3 (pfam13392), RVT-DGRs, Avd_like (cd16376)

Seq: CADIJZ010000008.1 Paraburkholderia rhynchosiae strain LMG 27174 genome assembly, contig: 8, whole genome shotgun sequence (302506 bp)
Overview 1 RT 1: 15117-26658 bp Neighborhood of RT #1 [15117, 26684] dnaG RVT-UNC HTH_38 Tra8 COG4849 Feature: gene Location: 15117-15851 bp Feature: gene Location: 16346-16732 bp Feature: gene Location: 16695-24467 bp Ori: CAB3677921.1 Gene: dnaG_1 Feature: domain Description: dnaG Location: 16710-17934 bp Feature: domain Description: dnaG Location: 16710-17934 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 18810-19323 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 18810-1932 3 bp Feature: gene Location: 24917-26077 bp Ori: CAB3677937.1 Feature: domain Description: HTH_38 Location: 24977-25040 bp Feature: domain Description: HTH_38 Location: 2 4977-2 5040 bp Feature: domain Description: Tra8 Location: 25103-26069 bp Feature: domain Description: Tra8 Location: 2 5103-2 6069 bp Feature: gene Location: 26328-26684 bp Ori: CAB3677955.1 Feature: domain Description: COG4849 Location: 26337-26658 bp Feature: domain Description: COG4849 Location: 2 6337-2 6658 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dnaG (TIGR01391), RVT-UG25/RVT-DGRs/RVT-UG10/RVT-UG17(RVT-UNC), HTH_38 (pfam13936), Tra8 (COG2826), COG4849 (Predicted nucleotidyltransferase )

Seq: CADIJZ010000022.1 Paraburkholderia rhynchosiae strain LMG 27174 genome assembly, contig: 22, whole genome shotgun sequence (142544 bp)
Overview 1 RT 1: 94329-99390 bp Neighborhood of RT #1 [94329, 99390] GIIM RVT-GII COG3547 Feature: gene Location: 94329-94847 bp Feature: gene Location: 95675-96001 bp Ori: CAB3724354.1 Feature: domain Description: GIIM Note: maturase Location: 95699-95915 bp Feature: domain Description: GIIM Note: maturase Location: 95699-95915 bp Feature: gene Location: 95998-96957 bp Ori: CAB3724366.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 96247-96910 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 96247-96910 bp Feature: gene Location: 97006-97998 bp Ori: CAB3724380.1 Feature: domain Description: COG3547 Location: 97045-97972 bp Feature: domain Description: COG3 547 Location: 97045-97972 bp Feature: gene Location: 98878-99390 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), RVT-GII, COG3547 (Transposase )

Seq: CADIJZ010000003.1 Paraburkholderia rhynchosiae strain LMG 27174 genome assembly, contig: 3, whole genome shotgun sequence (362978 bp)
Overview 1 RT 1: 327361-335021 bp Neighborhood of RT #1 [327361, 335182] argJ PRK12904 RVT_N RVT-GII GIIM HNHc DciA Feature: gene Location: 327361-328602 bp Ori: CAB3650800.1 Gene: argJ Feature: domain Description: argJ Location: 327400-328600 bp Feature: domain Description: argJ Location: 3274 00-328600 bp Feature: gene Location: 328767-331577 bp Ori: CAB3650824.1 Gene: secA Feature: domain Description: PRK12904 Location: 328779-331569 bp Feature: domain Description: PRK12904 Location: 328779-331569 bp Feature: gene Location: 331780-333480 bp Ori: CAB3650844.1 Feature: domain Description: RVT_N Location: 331837-332080 bp Feature: domain Description: RVT_N Location: 331837-332080 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 332125-332773 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 332125-332773 bp Feature: domain Description: GIIM Note: maturase Location: 332827-333058 bp Feature: domain Description: GIIM Note: maturase Location: 332827-333058 bp Feature: domain Description: HNHc Note: nucleases Location: 333274-333442 bp Feature: domain Description: HNHc Note: nucleases Location: 333274 -3334 4 2 bp Feature: gene Location: 334127-334390 bp Feature: gene Location: 334697-335182 bp Ori: CAB3650891.1 Feature: domain Description: DciA Location: 334775-335021 bp Feature: domain Description: DciA Location: 334 775-335021 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT argJ (PRK05388), PRK12904 (preprotein translocase subunit SecA; Reviewed), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DciA

Seq: CADIJZ010000093.1 Paraburkholderia rhynchosiae strain LMG 27174 genome assembly, contig: 93, whole genome shotgun sequence (2344 bp)
Overview 1 RT 1: 557-2207 bp Neighborhood of RT #1 [557, 2260] RVT_N RVT-GII GIIM HNH Feature: gene Location: 557-2260 bp Ori: CAB3745149.1 Feature: domain Description: RVT_N Location: 611-854 bp Feature: domain Description: RVT_N Location: 611-85 4 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 899-1538 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 899-15 38 bp Feature: domain Description: GIIM Note: maturase Location: 1589-1823 bp Feature: domain Description: GIIM Note: maturase Location: 15 89-1823 bp Feature: domain Description: HNH Note: nucleases Location: 2081-2207 bp Feature: domain Description: HNH Note: nucleases Location: 2081-2207 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844)

Seq: CADIJZ010000004.1 Paraburkholderia rhynchosiae strain LMG 27174 genome assembly, contig: 4, whole genome shotgun sequence (357701 bp)
Overview 1 RT 1: 275751-279733 bp 2 RT 2: 310452-321628 bp Neighborhood of RT #1 [275751, 279747] PurR WcaG RVT-GII TktA2 TktA2 Neighborhood of RT #2 [310452, 321639] PRK08195 PRK08300 RVT-GII DUF4096 PBP2_HisJ_LAO COG3666 DDE_Tnp_1 RVT-GII GIIM COG3547 COG3547 Feature: gene Location: 275751-276764 bp Ori: CAB3656649.1 Gene: cytR_2 Feature: domain Description: PurR Location: 275769-276732 bp Feature: domain Description: PurR Location: 27576 9-276 732 bp Feature: gene Location: 276931-277752 bp Ori: CAB3656679.1 Gene: udh_1 Feature: domain Description: WcaG Location: 276973-277486 bp Feature: domain Description: WcaG Location: 276 973-277486 bp Feature: gene Location: 278301-278900 bp Ori: CAB3656702.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 278475-278622 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 278475-2786 22 bp Feature: gene Location: 278888-279094 bp Ori: CAB3656722.1 Feature: domain Description: TktA2 Location: 278891-279089 bp Feature: domain Description: TktA2 Location: 278891-279089 bp Feature: gene Location: 279085-279747 bp Ori: CAB3656743.1 Gene: aptB_1 Feature: domain Description: TktA2 Location: 279106-279733 bp Feature: domain Description: TktA2 Location: 279106 -279733 bp Feature: gene Location: 310452-311477 bp Ori: CAB3657213.1 Feature: domain Description: PRK08195 Location: 310467-311454 bp Feature: domain Description: PRK08195 Location: 31046 7-311454 bp Feature: gene Location: 311474-312316 bp Ori: CAB3657231.1 Gene: bphJ Feature: domain Description: PRK08300 Location: 311480-312287 bp Feature: domain Description: PRK08300 Location: 311480-312287 bp Feature: gene Location: 312992-314500 bp Ori: CAB3657253.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 313418-314108 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 313418-314108 bp Feature: gene Location: 314923-315168 bp Ori: CAB3657272.1 Feature: domain Description: DUF4096 Location: 314929-315049 bp Feature: domain Description: DUF4096 Location: 314929-315049 bp Feature: gene Location: 315181-315837 bp Ori: CAB3657290.1 Feature: domain Description: PBP2_HisJ_LAO Location: 315256-315748 bp Feature: domain Description: PBP2_HisJ_LAO Location: 315256 -315748 bp Feature: gene Location: 315873-317318 bp Ori: CAB3657308.1 Feature: domain Description: COG3666 Location: 315885-316359 bp Feature: domain Description: COG36 6 6 Location: 315885-316 359 bp Feature: domain Description: DDE_Tnp_1 Location: 316569-317253 bp Feature: domain Description: DDE_Tnp_1 Location: 316 56 9-317253 bp Feature: gene Location: 317456-318898 bp Ori: CAB3657322.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 317858-318512 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 317858-318512 bp Feature: domain Description: GIIM Note: maturase Location: 318596-318800 bp Feature: domain Description: GIIM Note: maturase Location: 318596 -318800 bp Feature: gene Location: 319500-320522 bp Ori: CAB3657339.1 Feature: domain Description: COG3547 Location: 319521-320466 bp Feature: domain Description: COG3547 Location: 319521-32046 6 bp Feature: gene Location: 320647-321639 bp Ori: CAB3657360.1 Feature: domain Description: COG3547 Location: 320686-321628 bp Feature: domain Description: COG3547 Location: 3206 86 -3216 28 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PurR (COG1609), WcaG (COG0451), RVT-GII, TktA2 (COG3958), PRK08195 (4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated), PRK08300 (acetaldehyde dehydrogenase; Validated), DUF4096 (pfam13340), PBP2_HisJ_LAO (cd13703), COG3666 (Transposase ), DDE_Tnp_1 (pfam01609)
GIIM (pfam08388), COG3547 (Transposase )