myRT

myRT report for GCA_902859855.1_LMG_29542

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Seq: CADIKH010000076.1 Paraburkholderia humisilvae strain LMG 29542 genome assembly, contig: 76, whole genome shotgun sequence (21252 bp)
Overview 1 RT 1: 2791-8625 bp Neighborhood of RT #1 [2791, 8804] PRK06526 RVT-GII RVT-GII RIO2_C Feature: gene Location: 2791-3606 bp Ori: CAB3773491.1 Feature: domain Description: PRK06526 Location: 2920-3532 bp Feature: domain Description: PRK06526 Location: 2920-3532 bp Feature: gene Location: 3603-3824 bp Feature: gene Location: 3920-4204 bp Ori: CAB3773495.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3923-4181 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3923-41 81 bp Feature: gene Location: 4204-4884 bp Ori: CAB3773497.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4630-4855 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4630-4855 bp Feature: gene Location: 5496-6854 bp Feature: gene Location: 7959-8804 bp Ori: CAB3773500.1 Feature: domain Description: RIO2_C Location: 8391-8625 bp Feature: domain Description: RIO2_C Location: 8391 -8625 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK06526 (transposase; Provisional), RVT-GII, RIO2_C (cd05144)

Seq: CADIKH010000324.1 Paraburkholderia humisilvae strain LMG 29542 genome assembly, contig: 324, whole genome shotgun sequence (1494 bp)
Overview 1 RT 1: 43-1273 bp Neighborhood of RT #1 [43, 1350] RVT-GII GIIM Feature: gene Location: 43-1350 bp Ori: CAB3775216.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 328-967 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32 8-967 bp Feature: domain Description: GIIM Note: maturase Location: 1042-1273 bp Feature: domain Description: GIIM Note: maturase Location: 1042 -12 73 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: CADIKH010000033.1 Paraburkholderia humisilvae strain LMG 29542 genome assembly, contig: 33, whole genome shotgun sequence (81220 bp)
Overview 1 RT 1: 158-2849 bp Neighborhood of RT #1 [158, 2899] RVT-GII GIIM COG3547 Feature: gene Location: 158-1402 bp Ori: CAB3767333.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 362-1019 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 62-1019 bp Feature: domain Description: GIIM Note: maturase Location: 1097-1328 bp Feature: domain Description: GIIM Note: maturase Location: 1097-13 28 bp Feature: gene Location: 1713-1937 bp Feature: gene Location: 2189-2899 bp Ori: CAB3767341.1 Feature: domain Description: COG3547 Location: 2195-2849 bp Feature: domain Description: COG3 547 Location: 2195-2849 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), COG3547 (Transposase )

Seq: CADIKH010000023.1 Paraburkholderia humisilvae strain LMG 29542 genome assembly, contig: 23, whole genome shotgun sequence (117043 bp)
Overview 1 RT 1: 111739-115373 bp Neighborhood of RT #1 [111739, 115373] HTH_35 RVT-GII DUF302 Feature: gene Location: 111739-112038 bp Ori: CAB3764228.1 Feature: domain Description: HTH_35 Location: 111769-111982 bp Feature: domain Description: HTH_35 Location: 111769-111982 bp Feature: gene Location: 112324-112734 bp Feature: gene Location: 113277-113684 bp Ori: CAB3764234.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 113280-113439 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 113280-1134 39 bp Feature: gene Location: 113589-114080 bp Ori: CAB3764237.1 Feature: domain Description: DUF302 Location: 113724-114069 bp Feature: domain Description: DUF302 Location: 113724 -114 069 bp Feature: gene Location: 114651-115373 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_35 (pfam13693), RVT-GII, DUF302 (pfam03625)

Seq: CADIKH010000274.1 Paraburkholderia humisilvae strain LMG 29542 genome assembly, contig: 274, whole genome shotgun sequence (2194 bp)
Overview 1 RT 1: 165-1491 bp Neighborhood of RT #1 [165, 1694] RVT_N RVT-GII YkfC Feature: gene Location: 165-1694 bp Ori: CAB3775137.1 Feature: domain Description: RVT_N Location: 216-459 bp Feature: domain Description: RVT_N Location: 216-45 9 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 504-1167 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 04-1167 bp Feature: domain Description: YkfC Location: 1290-1491 bp Feature: domain Description: YkfC Location: 1290-1491 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, YkfC (COG3344)

Seq: CADIKH010000273.1 Paraburkholderia humisilvae strain LMG 29542 genome assembly, contig: 273, whole genome shotgun sequence (2200 bp)
Overview 1 RT 1: 105-1767 bp Neighborhood of RT #1 [105, 1805] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 105-1805 bp Ori: CAB3775136.1 Feature: domain Description: RVT_N Location: 162-405 bp Feature: domain Description: RVT_N Location: 16 2-405 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 450-1098 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 450-1098 bp Feature: domain Description: GIIM Note: maturase Location: 1149-1383 bp Feature: domain Description: GIIM Note: maturase Location: 1149-1383 bp Feature: domain Description: HNHc Note: nucleases Location: 1614-1767 bp Feature: domain Description: HNHc Note: nucleases Location: 16 14-176 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: CADIKH010000112.1 Paraburkholderia humisilvae strain LMG 29542 genome assembly, contig: 112, whole genome shotgun sequence (10521 bp)
Overview 1 RT 1: 2918-8735 bp Neighborhood of RT #1 [2918, 9124] rve_3 RVT-GII DUF3670 HepA COG4279 Feature: gene Location: 2918-3334 bp Ori: CAB3774382.1 Feature: domain Description: rve_3 Location: 2951-3128 bp Feature: domain Description: rve_3 Location: 2951-3128 bp Feature: gene Location: 3358-3627 bp Feature: gene Location: 3723-5201 bp Ori: CAB3774384.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4134-4821 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4134-4821 bp Feature: gene Location: 5411-8089 bp Ori: CAB3774385.1 Gene: rapA Feature: domain Description: DUF3670 Location: 6119-6509 bp Feature: domain Description: DUF367 0 Location: 6119-6509 bp Feature: domain Description: HepA Location: 6602-8054 bp Feature: domain Description: HepA Location: 6602-8054 bp Feature: gene Location: 8108-9124 bp Ori: CAB3774386.1 Feature: domain Description: COG4279 Location: 8243-8735 bp Feature: domain Description: COG427 9 Location: 8243-87 35 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rve_3 (pfam13683), RVT-GII, DUF3670 (pfam12419), HepA (COG0553), COG4279 (Uncharacterized conserved protein, contains Zn finger domain )

Seq: CADIKH010000196.1 Paraburkholderia humisilvae strain LMG 29542 genome assembly, contig: 196, whole genome shotgun sequence (3967 bp)
Overview 1 RT 1: 1784-3771 bp Neighborhood of RT #1 [1784, 3854] Rve Rve RVT-GII GIIM Feature: gene Location: 1784-2119 bp Ori: CAB3774893.1 Feature: domain Description: Rve Location: 1826-1907 bp Feature: domain Description: Rve Location: 18 26-1907 bp Feature: domain Description: Rve Location: 1955-2036 bp Feature: domain Description: Rve Location: 1955-2036 bp Feature: gene Location: 2459-2608 bp Feature: gene Location: 2610-3854 bp Ori: CAB3774895.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2814-3468 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28 14-3468 bp Feature: domain Description: GIIM Note: maturase Location: 3549-3771 bp Feature: domain Description: GIIM Note: maturase Location: 3549-3771 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Rve (COG3316), RVT-GII, GIIM (pfam08388)

Seq: CADIKH010000009.1 Paraburkholderia humisilvae strain LMG 29542 genome assembly, contig: 9, whole genome shotgun sequence (237753 bp)
Overview 1 RT 1: 200944-206418 bp Neighborhood of RT #1 [200944, 206418] RVT-UG7 Feature: gene Location: 200944-201126 bp Feature: gene Location: 201416-202090 bp Feature: gene Location: 202886-204688 bp Ori: CAB3754751.1 Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 203438-203837 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 203438-203837 bp Feature: gene Location: 204678-205403 bp Feature: gene Location: 205846-206418 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG7