myRT

myRT report for GCA_902859895.1_LMG_28138

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Seq: CADIKM010000006.1 Pararobbsia alpina strain LMG 28138 genome assembly, contig: 6, whole genome shotgun sequence (274907 bp)
Overview 1 RT 1: 6931-22200 bp Neighborhood of RT #1 [6931, 22205] UvrA UvrA UvrA UvrA RVT_N RVT-GII GIIM HNHc prfB lysS Feature: gene Location: 6931-10017 bp Feature: gene Location: 10406-16345 bp Ori: CAB3784060.1 Gene: uvrA_1 Feature: domain Description: UvrA Location: 10418-13400 bp Feature: domain Description: UvrA Location: 1 041 8-1 3400 bp Feature: domain Description: UvrA Location: 13499-14432 bp Feature: domain Description: UvrA Location: 1 3499-1 4432 bp Feature: domain Description: UvrA Location: 14489-15314 bp Feature: domain Description: UvrA Location: 1 4489-1 531 4 bp Feature: domain Description: UvrA Location: 15431-16283 bp Feature: domain Description: UvrA Location: 1 5431 -1 6283 bp Feature: gene Location: 17676-19376 bp Ori: CAB3784063.1 Feature: domain Description: RVT_N Location: 17733-17976 bp Feature: domain Description: RVT_N Location: 1 7733-1 7976 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18021-18669 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 8021 -1 8669 bp Feature: domain Description: GIIM Note: maturase Location: 18720-18954 bp Feature: domain Description: GIIM Note: maturase Location: 1 8720-1 8954 bp Feature: domain Description: HNHc Note: nucleases Location: 19197-19338 bp Feature: domain Description: HNHc Note: nucleases Location: 1 91 97-1 9338 bp Feature: gene Location: 19527-20594 bp Ori: CAB3784066.1 Gene: prfB_1 Feature: domain Description: prfB Location: 19563-20589 bp Feature: domain Description: prfB Location: 1 9563-20589 bp Feature: gene Location: 20676-22205 bp Ori: CAB3784069.1 Gene: lysS Feature: domain Description: lysS Location: 20727-22200 bp Feature: domain Description: lysS Location: 20727-22200 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT UvrA (COG0178), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), prfB (TIGR00020), lysS (PRK02983)

Seq: CADIKM010000028.1 Pararobbsia alpina strain LMG 28138 genome assembly, contig: 28, whole genome shotgun sequence (67017 bp)
Overview 1 RT 1: 8392-12425 bp Neighborhood of RT #1 [8392, 12436] PLDc_unchar5 PHA02517 RVT-GII GIIM PHA02517 InsE Feature: gene Location: 8392-8643 bp Ori: CAB3798030.1 Feature: domain Description: PLDc_unchar5 Location: 8437-8569 bp Feature: domain Description: PLDc_unchar5 Location: 8437-8569 bp Feature: gene Location: 8923-9387 bp Ori: CAB3798035.1 Feature: domain Description: PHA02517 Location: 8926-9358 bp Feature: domain Description: PHA02 517 Location: 892 6-9358 bp Feature: gene Location: 9504-11021 bp Ori: CAB3798040.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9762-10500 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9762 -10500 bp Feature: domain Description: GIIM Note: maturase Location: 10596-10773 bp Feature: domain Description: GIIM Note: maturase Location: 10596-10773 bp Feature: gene Location: 11658-11930 bp Ori: CAB3798045.1 Feature: domain Description: PHA02517 Location: 11661-11895 bp Feature: domain Description: PHA02 517 Location: 11661-11895 bp Feature: gene Location: 12113-12436 bp Ori: CAB3798049.1 Feature: domain Description: InsE Location: 12125-12425 bp Feature: domain Description: InsE Location: 12 12 5-12 42 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PLDc_unchar5 (cd09133), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), InsE (COG2963)

Seq: CADIKM010000069.1 Pararobbsia alpina strain LMG 28138 genome assembly, contig: 69, whole genome shotgun sequence (16784 bp)
Overview 1 RT 1: 6855-11049 bp Neighborhood of RT #1 [6855, 11159] PRK09183 RVT-GII GIIM RVT-GII group_II_RT_mat PhdYeFM_antitox Feature: gene Location: 6855-6962 bp Feature: gene Location: 7402-8190 bp Ori: CAB3804969.1 Feature: domain Description: PRK09183 Location: 7423-8125 bp Feature: domain Description: PRK09183 Location: 7423 -8125 bp Feature: gene Location: 8197-9618 bp Ori: CAB3804973.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8206-8608 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8206-8608 bp Feature: domain Description: GIIM Note: maturase Location: 8677-8887 bp Feature: domain Description: GIIM Note: maturase Location: 8677-8887 bp Feature: gene Location: 9646-9810 bp Ori: CAB3804977.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9652-9805 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9652-9805 bp Feature: gene Location: 9807-10160 bp Ori: CAB3804981.1 Feature: domain Description: group_II_RT_mat Note: maturase Location: 9927-10128 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 9927-10128 bp Feature: gene Location: 10908-11159 bp Ori: CAB3804985.1 Feature: domain Description: PhdYeFM_antitox Location: 10911-11049 bp Feature: domain Description: PhdYeFM_antitox Location: 10911-11049 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09183 (transposase/IS protein; Provisional), RVT-GII, GIIM (pfam08388), group_II_RT_mat (TIGR04416), PhdYeFM_antitox (pfam02604)

Seq: CADIKM010000020.1 Pararobbsia alpina strain LMG 28138 genome assembly, contig: 20, whole genome shotgun sequence (93427 bp)
Overview 1 RT 1: 86994-93036 bp Neighborhood of RT #1 [86994, 93131] ADP_ribosyl_GH PHA02517 RVT-UG15 COG2085 Feature: gene Location: 86994-87695 bp Ori: CAB3795118.1 Feature: domain Description: ADP_ribosyl_GH Location: 87123-87453 bp Feature: domain Description: ADP_ribosyl_GH Location: 87123-874 53 bp Feature: gene Location: 88994-89335 bp Ori: CAB3795121.1 Feature: domain Description: PHA02517 Location: 89006-89327 bp Feature: domain Description: PHA02517 Location: 89006-89327 bp Feature: gene Location: 89807-91465 bp Ori: CAB3795124.1 Feature: RT Description: RVT-UG15 Note: UG15 RT Location: 90332-90731 bp Feature: RT Description: RVT-UG15 Note: UG15 RT Location: 90332-90731 bp Feature: gene Location: 92436-93131 bp Ori: CAB3795127.1 Feature: domain Description: COG2085 Location: 92439-93036 bp Feature: domain Description: COG2085 Location: 924 39-93036 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ADP_ribosyl_GH (pfam03747), PHA02517 (putative transposase OrfB; Reviewed), RVT-UG15, COG2085 (Predicted dinucleotide-binding enzyme )