myRT

myRT report for GCA_902859915.1_LMG_28614

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Seq: CADIKK010000106.1 Burkholderia ultramafica strain LMG 28614 genome assembly, contig: 106, whole genome shotgun sequence (3393 bp)
Overview 1 RT 1: 152-3153 bp Neighborhood of RT #1 [152, 3233] Rve RVT-GII GIIM HNH RVT_N RVT-GII Rve Feature: gene Location: 152-433 bp Feature: domain Description: Rve Location: 245-377 bp Feature: domain Description: Rve Location: 245-377 bp Feature: gene Location: 464-1495 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 470-818 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 470-81 8 bp Feature: domain Description: GIIM Note: maturase Location: 869-1103 bp Feature: domain Description: GIIM Note: maturase Location: 869-1 1 03 bp Feature: domain Description: HNH Note: nucleases Location: 1355-1472 bp Feature: domain Description: HNH Note: nucleases Location: 1 355-1 472 bp Feature: gene Location: 1434-2111 bp Feature: RT Description: RVT_N Location: 1479-1722 bp Feature: RT Description: RVT_N Location: 1 479-1 722 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1767-2007 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 767-2007 bp Feature: gene Location: 2595-3233 bp Feature: domain Description: Rve Location: 2634-3153 bp Feature: domain Description: Rve Location: 2634-31 53 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, Rve (COG3316), GIIM (pfam08388), HNH (pfam01844)

Seq: CADIKK010000042.1 Burkholderia ultramafica strain LMG 28614 genome assembly, contig: 42, whole genome shotgun sequence (57529 bp)
Overview 1 RT 1: 29858-35822 bp Neighborhood of RT #1 [29858, 35944] CcdA CcdB RVT-GII GIIM PRK11160 CydD Feature: gene Location: 29858-30100 bp Feature: domain Description: CcdA Location: 29888-30098 bp Feature: domain Description: CcdA Location: 2 9888-30098 bp Feature: gene Location: 30100-30420 bp Feature: domain Description: CcdB Location: 30109-30409 bp Feature: domain Description: CcdB Location: 30109-30409 bp Feature: gene Location: 30471-31649 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30726-31347 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3072 6-31347 bp Feature: domain Description: GIIM Note: maturase Location: 31398-31551 bp Feature: domain Description: GIIM Note: maturase Location: 31398-31551 bp Feature: gene Location: 32364-34169 bp Feature: domain Description: PRK11160 Location: 32427-34137 bp Feature: domain Description: PRK11160 Location: 32 42 7-34137 bp Feature: gene Location: 34166-35944 bp Feature: domain Description: CydD Location: 34238-35822 bp Feature: domain Description: CydD Location: 342 38-3582 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CcdA (pfam07362), CcdB (pfam01845), RVT-GII, GIIM (pfam08388), PRK11160 (cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed), CydD (TIGR02857)

Seq: CADIKK010000028.1 Burkholderia ultramafica strain LMG 28614 genome assembly, contig: 28, whole genome shotgun sequence (106586 bp)
Overview 1 RT 1: 49398-52471 bp Neighborhood of RT #1 [49398, 52479] HTH_Tnp_1 RVT-GII PRK08312 PRK08312 Feature: gene Location: 49398-49511 bp Feature: gene Location: 50834-51163 bp Feature: domain Description: HTH_Tnp_1 Location: 50993-51098 bp Feature: domain Description: HTH_Tnp_1 Location: 50993 -51098 bp Feature: gene Location: 51224-51676 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51233-51374 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5123 3 -513 74 bp Feature: gene Location: 51697-51963 bp Feature: domain Description: PRK08312 Location: 51706-51958 bp Feature: domain Description: PRK083 12 Location: 51706-51958 bp Feature: gene Location: 51994-52479 bp Feature: domain Description: PRK08312 Location: 51997-52471 bp Feature: domain Description: PRK083 12 Location: 51997-52471 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_Tnp_1 (pfam01527), RVT-GII, PRK08312 (indolepyruvate oxidoreductase subunit beta family protein)

Seq: CADIKK010000123.1 Burkholderia ultramafica strain LMG 28614 genome assembly, contig: 123, whole genome shotgun sequence (2353 bp)
Overview 1 RT 1: 113-2187 bp Neighborhood of RT #1 [113, 2187] Rve RVT-GII GIIM Feature: gene Location: 113-589 bp Feature: domain Description: Rve Location: 116-551 bp Feature: domain Description: Rve Location: 116-551 bp Feature: gene Location: 752-1885 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 767-1208 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 767-1208 bp Feature: domain Description: GIIM Note: maturase Location: 1259-1493 bp Feature: domain Description: GIIM Note: maturase Location: 1259-14 93 bp Feature: gene Location: 2044-2187 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Rve (COG3316), RVT-GII, GIIM (pfam08388)

Seq: CADIKK010000124.1 Burkholderia ultramafica strain LMG 28614 genome assembly, contig: 124, whole genome shotgun sequence (2075 bp)
Overview 1 RT 1: 100-1264 bp Neighborhood of RT #1 [100, 1344] RVT-GII GIIM Feature: gene Location: 100-1344 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 304-958 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 304-95 8 bp Feature: domain Description: GIIM Note: maturase Location: 1039-1264 bp Feature: domain Description: GIIM Note: maturase Location: 1039-1264 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: CADIKK010000033.1 Burkholderia ultramafica strain LMG 28614 genome assembly, contig: 33, whole genome shotgun sequence (92331 bp)
Overview 1 RT 1: 19417-24477 bp Neighborhood of RT #1 [19417, 24665] LysR RVT-GII HTH_Tnp_1 HTH_Tnp_1 Tra5 Feature: gene Location: 19417-20304 bp Feature: domain Description: LysR Location: 19420-20260 bp Feature: domain Description: LysR Location: 19420-2026 0 bp Feature: gene Location: 20784-21368 bp Feature: gene Location: 21527-22801 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21755-22445 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21755-22445 bp Feature: gene Location: 23089-23589 bp Feature: domain Description: HTH_Tnp_1 Location: 23101-23248 bp Feature: domain Description: HTH_Tnp_1 Location: 23101-23248 bp Feature: domain Description: HTH_Tnp_1 Location: 23272-23503 bp Feature: domain Description: HTH_Tnp_1 Location: 23272-23503 bp Feature: gene Location: 23586-24665 bp Feature: domain Description: Tra5 Location: 23646-24477 bp Feature: domain Description: Tra5 Location: 236 46 -24477 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LysR (COG0583), RVT-GII, HTH_Tnp_1 (pfam01527), Tra5 (COG2801)