myRT

myRT report for GCA_902859945.1_LMG_28688

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Seq: CADIKL010000006.1 Paraburkholderia caffeinitolerans strain LMG 28688 genome assembly, contig: 6, whole genome shotgun sequence (273162 bp)
Overview 1 RT 1: 101362-104618 bp Neighborhood of RT #1 [101362, 104641] RVT-DGRs Avd_like DUF1566 Feature: gene Location: 101362-102180 bp Feature: gene Location: 102198-102455 bp Feature: gene Location: 102458-103795 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 102881-103568 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 02881 -1 03568 bp Feature: gene Location: 103788-104165 bp Feature: domain Description: Avd_like Location: 103815-104121 bp Feature: domain Description: Avd_like Location: 1 0381 5-1 041 21 bp Feature: gene Location: 104180-104641 bp Feature: domain Description: DUF1566 Location: 104438-104618 bp Feature: domain Description: DUF1 566 Location: 1 04438-1 0461 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376), DUF1566 (pfam07603)

Seq: CADIKL010000003.1 Paraburkholderia caffeinitolerans strain LMG 28688 genome assembly, contig: 3, whole genome shotgun sequence (310310 bp)
Overview 1 RT 1: 168364-171931 bp Neighborhood of RT #1 [168364, 171954] INT_Rci_Hp1_C HTH_17 RVT-DGRs Avd_like DUF1566 Feature: gene Location: 168364-169389 bp Feature: domain Description: INT_Rci_Hp1_C Location: 168859-169336 bp Feature: domain Description: INT_Rci_Hp1_C Location: 168859-169336 bp Feature: gene Location: 169429-169689 bp Feature: domain Description: HTH_17 Location: 169477-169633 bp Feature: domain Description: HTH_17 Location: 169477-169633 bp Feature: gene Location: 169771-170895 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 169984-170671 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 169984-170671 bp Feature: gene Location: 171098-171475 bp Feature: domain Description: Avd_like Location: 171125-171431 bp Feature: domain Description: Avd_like Location: 17112 5-171431 bp Feature: gene Location: 171490-171954 bp Feature: domain Description: DUF1566 Location: 171805-171931 bp Feature: domain Description: DUF1566 Location: 171805-171931 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_Rci_Hp1_C (cd00796), HTH_17 (pfam12728), RVT-DGRs, Avd_like (cd16376), DUF1566 (pfam07603)

Seq: CADIKL010000049.1 Paraburkholderia caffeinitolerans strain LMG 28688 genome assembly, contig: 49, whole genome shotgun sequence (55738 bp)
Overview 1 RT 1: 37400-43319 bp Neighborhood of RT #1 [37400, 43387] SapB DUF3701 xerC RVT-GII GIIM RVT-GII GIIM RVT-GII Feature: gene Location: 37400-38077 bp Feature: domain Description: SapB Location: 37415-38063 bp Feature: domain Description: SapB Location: 3 7415-3 8063 bp Feature: gene Location: 38291-39967 bp Feature: domain Description: DUF3701 Location: 38576-38846 bp Feature: domain Description: DUF3 701 Location: 3 8576-3 8846 bp Feature: domain Description: xerC Location: 38972-39956 bp Feature: domain Description: xerC Location: 3 8972-3 9956 bp Feature: gene Location: 40286-41590 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40571-41210 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40571-41210 bp Feature: domain Description: GIIM Note: maturase Location: 41285-41504 bp Feature: domain Description: GIIM Note: maturase Location: 41285-41504 bp Feature: gene Location: 42142-42774 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42145-42391 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42145-423 91 bp Feature: domain Description: GIIM Note: maturase Location: 42469-42691 bp Feature: domain Description: GIIM Note: maturase Location: 42469-42691 bp Feature: gene Location: 42755-43387 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42959-43319 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42959-43 3 19 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SapB (smart00741), DUF3701 (pfam12482), xerC (PRK01287), RVT-GII, GIIM (pfam08388)