myRT

myRT report for GCA_902860235.1_LMG_9964

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Seq: CADILN010000020.1 Paraburkholderia phenoliruptrix strain LMG 9964 genome assembly, contig: 20, whole genome shotgun sequence (62745 bp)
Overview 1 RT 1: 8772-11774 bp Neighborhood of RT #1 [8772, 11797] DUF772 IS5 RVT-GII DUF772 Feature: gene Location: 8772-8954 bp Feature: gene Location: 8951-9685 bp Ori: CAB4052869.1 Feature: domain Description: DUF772 Location: 9044-9131 bp Feature: domain Description: DUF772 Location: 9044-91 31 bp Feature: domain Description: IS5 Location: 9428-9653 bp Feature: domain Description: IS5 Location: 9428-9653 bp Feature: gene Location: 9678-11171 bp Ori: CAB4052870.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10089-10779 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 0089-1 0779 bp Feature: gene Location: 11168-11380 bp Feature: gene Location: 11507-11797 bp Ori: CAB4052872.1 Feature: domain Description: DUF772 Location: 11663-11774 bp Feature: domain Description: DUF772 Location: 1 1 663-1 1 774 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF772 (pfam05598), IS5 (COG3039), RVT-GII

Seq: CADILN010000001.1 Paraburkholderia phenoliruptrix strain LMG 9964 genome assembly, contig: 1, whole genome shotgun sequence (1536822 bp)
Overview 1 RT 1: 1431302-1439472 bp Neighborhood of RT #1 [1431302, 1439597] TPR TPR TPR GT9_LPS_heptosyltransferase RVT-UG8 RVT-UG3 KOG3216 RutF Feature: gene Location: 1431302-1433278 bp Ori: CAB4047636.1 Feature: domain Description: TPR Location: 1431560-1431770 bp Feature: domain Description: TPR Location: 1431560-1431770 bp Feature: domain Description: TPR Location: 1431791-1432049 bp Feature: domain Description: TPR Location: 1431791-1432 049 bp Feature: domain Description: TPR Location: 1432100-1432352 bp Feature: domain Description: TPR Location: 1432 100-1432 352 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 1432463-1433186 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 1432 463-1433186 bp Feature: gene Location: 1433330-1433806 bp Feature: gene Location: 1434557-1435993 bp Ori: CAB4047638.1 Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 1434563-1434998 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 1434563-1434998 bp Feature: gene Location: 1436112-1436534 bp Feature: gene Location: 1436527-1437786 bp Ori: CAB4047640.1 Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 1436815-1437304 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 1436815-1437304 bp Feature: gene Location: 1438501-1439028 bp Ori: CAB4047641.1 Feature: domain Description: KOG3216 Location: 1438513-1438972 bp Feature: domain Description: KOG32 16 Location: 1438513-1438972 bp Feature: gene Location: 1438935-1439597 bp Ori: CAB4047642.1 Feature: domain Description: RutF Location: 1439052-1439472 bp Feature: domain Description: RutF Location: 1439052 -1439472 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TPR (smart00028), GT9_LPS_heptosyltransferase (cd03789), RVT-UG8, RVT-UG3, KOG3216 (KOG3216, Diamine acetyltransferase ), RutF (TIGR03615)