myRT

myRT report for GCA_903231515.1_IST4112

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Seq: CAFBRQ010000065.1 Burkholderia cenocepacia strain IST4112 genome assembly, contig: sc18|si182480, whole genome shotgun sequence (182480 bp)
Overview 1 RT 1: 43598-48736 bp Neighborhood of RT #1 [43598, 48804] PRK14673 RsmI RVT-GII GIIM RlpA YcbL-like_MBL-fold Feature: gene Location: 43598-44026 bp Ori: CAB5102301.1 Feature: domain Description: PRK14673 Location: 43601-44018 bp Feature: domain Description: PRK1 4673 Location: 43601 -4401 8 bp Feature: gene Location: 44073-44960 bp Ori: CAB5102318.1 Feature: domain Description: RsmI Location: 44121-44934 bp Feature: domain Description: RsmI Location: 441 21 -44934 bp Feature: gene Location: 45068-46357 bp Ori: CAB5102334.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45323-45938 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45323-45938 bp Feature: domain Description: GIIM Note: maturase Location: 45998-46199 bp Feature: domain Description: GIIM Note: maturase Location: 45998-461 99 bp Feature: gene Location: 46893-47504 bp Ori: CAB5102351.1 Feature: domain Description: RlpA Location: 46965-47469 bp Feature: domain Description: RlpA Location: 46965-47469 bp Feature: gene Location: 48160-48804 bp Ori: CAB5102368.1 Feature: domain Description: YcbL-like_MBL-fold Location: 48172-48736 bp Feature: domain Description: YcbL-like_MBL-fold Location: 481 72-48736 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK14673 (hypothetical protein; Provisional), RsmI (COG0313), RVT-GII, GIIM (pfam08388), RlpA (COG0797), YcbL-like_MBL-fold (cd07737)

Seq: CAFBRQ010000061.1 Burkholderia cenocepacia strain IST4112 genome assembly, contig: sc14|si206344, whole genome shotgun sequence (206344 bp)
Overview 1 RT 1: 66021-71185 bp Neighborhood of RT #1 [66021, 71301] YrrM RVT-UG17 Resolvase HTH_Hin_like DUF4238 Feature: gene Location: 66021-66737 bp Ori: CAB5094189.1 Feature: domain Description: YrrM Location: 66237-66726 bp Feature: domain Description: YrrM Location: 662 37-6672 6 bp Feature: gene Location: 67961-68053 bp Feature: gene Location: 68065-69435 bp Ori: CAB5094214.1 Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 68293-68899 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 682 93-68899 bp Feature: gene Location: 69474-69716 bp Ori: CAB5094228.1 Feature: domain Description: Resolvase Location: 69477-69573 bp Feature: domain Description: Resolvase Location: 69477-69573 bp Feature: domain Description: HTH_Hin_like Location: 69582-69702 bp Feature: domain Description: HTH_Hin_like Location: 69582 -69702 bp Feature: gene Location: 70417-71301 bp Ori: CAB5094244.1 Feature: domain Description: DUF4238 Location: 70597-71185 bp Feature: domain Description: DUF42 38 Location: 70597-71185 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YrrM (COG4122), RVT-UG17, Resolvase (smart00857), HTH_Hin_like (cd00569), DUF4238 (pfam14022)

Seq: CAFBRQ010000109.1 Burkholderia cenocepacia strain IST4112 genome assembly, contig: sc6|si279394, whole genome shotgun sequence (279394 bp)
Overview 1 RT 1: 134038-139369 bp Neighborhood of RT #1 [134038, 139392] his_ut_repres FIN RVT-Retrons Histone_HNS MFS_MucK Feature: gene Location: 134038-134793 bp Ori: CAB5168155.1 Feature: domain Description: his_ut_repres Location: 134116-134788 bp Feature: domain Description: his_ut_repres Location: 13 4116-13 4788 bp Feature: gene Location: 135028-135600 bp Ori: CAB5168158.1 Feature: domain Description: FIN Location: 135214-135565 bp Feature: domain Description: FIN Location: 13 5214-13 5565 bp Feature: gene Location: 135854-137203 bp Ori: CAB5168170.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 136319-136955 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 13 63 19-13 6955 bp Feature: gene Location: 137529-137858 bp Ori: CAB5168187.1 Feature: domain Description: Histone_HNS Location: 137550-137787 bp Feature: domain Description: Histone_HNS Location: 13 7550-13 7787 bp Feature: gene Location: 138145-139392 bp Ori: CAB5168198.1 Feature: domain Description: MFS_MucK Location: 138235-139369 bp Feature: domain Description: MFS_MucK Location: 13 823 5-13 93 69 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT his_ut_repres (TIGR02018), FIN (cd16389), RVT-Retrons, Histone_HNS (pfam00816), MFS_MucK (cd17371)