myRT

myRT report for GCA_903470695.1_WGS_IST4130

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Seq: CAGKPC010000058.1 Burkholderia cenocepacia strain IST4130 genome assembly, contig: sc13|si182685, whole genome shotgun sequence (182685 bp)
Overview 1 RT 1: 11792-16956 bp Neighborhood of RT #1 [11792, 17072] YrrM RVT-UG17 Resolvase HTH_Hin_like DUF4238 Feature: gene Location: 11792-12508 bp Ori: CAB5297987.1 Feature: domain Description: YrrM Location: 12008-12497 bp Feature: domain Description: YrrM Location: 1 2008-1 2497 bp Feature: gene Location: 13732-13824 bp Feature: gene Location: 13836-15206 bp Ori: CAB5298009.1 Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 14064-14670 bp Feature: RT Description: RVT-UG1 7 Note: UG1 7 RT Location: 1 4064-1 4670 bp Feature: gene Location: 15245-15487 bp Ori: CAB5298021.1 Feature: domain Description: Resolvase Location: 15248-15344 bp Feature: domain Description: Resolvase Location: 1 5248-1 5344 bp Feature: domain Description: HTH_Hin_like Location: 15353-15473 bp Feature: domain Description: HTH_Hin_like Location: 1 5353-1 5473 bp Feature: gene Location: 16188-17072 bp Ori: CAB5298033.1 Feature: domain Description: DUF4238 Location: 16368-16956 bp Feature: domain Description: DUF4238 Location: 1 6368-1 6956 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YrrM (COG4122), RVT-UG17, Resolvase (smart00857), HTH_Hin_like (cd00569), DUF4238 (pfam14022)

Seq: CAGKPC010000098.1 Burkholderia cenocepacia strain IST4130 genome assembly, contig: sc4|si469147, whole genome shotgun sequence (469147 bp)
Overview 1 RT 1: 139030-144361 bp Neighborhood of RT #1 [139030, 144384] his_ut_repres FIN RVT-Retrons Histone_HNS MFS_MucK Feature: gene Location: 139030-139785 bp Ori: CAB5350689.1 Feature: domain Description: his_ut_repres Location: 139108-139780 bp Feature: domain Description: his_ut_repres Location: 139108-139780 bp Feature: gene Location: 140020-140592 bp Ori: CAB5350692.1 Feature: domain Description: FIN Location: 140206-140557 bp Feature: domain Description: FIN Location: 1402 06-140557 bp Feature: gene Location: 140846-142195 bp Ori: CAB5350695.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 141311-141947 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 141311-141947 bp Feature: gene Location: 142521-142850 bp Ori: CAB5350698.1 Feature: domain Description: Histone_HNS Location: 142542-142779 bp Feature: domain Description: Histone_HNS Location: 142 542 -142 779 bp Feature: gene Location: 143137-144384 bp Ori: CAB5350701.1 Feature: domain Description: MFS_MucK Location: 143227-144361 bp Feature: domain Description: MFS_MucK Location: 1432 2 7-144361 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT his_ut_repres (TIGR02018), FIN (cd16389), RVT-Retrons, Histone_HNS (pfam00816), MFS_MucK (cd17371)

Seq: CAGKPC010000059.1 Burkholderia cenocepacia strain IST4130 genome assembly, contig: sc14|si182473, whole genome shotgun sequence (182473 bp)
Overview 1 RT 1: 43598-48736 bp Neighborhood of RT #1 [43598, 48804] PRK14673 RsmI RVT-GII GIIM RlpA YcbL-like_MBL-fold Feature: gene Location: 43598-44026 bp Ori: CAB5300596.1 Feature: domain Description: PRK14673 Location: 43601-44018 bp Feature: domain Description: PRK14673 Location: 43 601-44018 bp Feature: gene Location: 44073-44960 bp Ori: CAB5300609.1 Feature: domain Description: RsmI Location: 44121-44934 bp Feature: domain Description: RsmI Location: 44121-4493 4 bp Feature: gene Location: 45068-46357 bp Ori: CAB5300622.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45323-45938 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 453 23 -4593 8 bp Feature: domain Description: GIIM Note: maturase Location: 45998-46199 bp Feature: domain Description: GIIM Note: maturase Location: 45998-46199 bp Feature: gene Location: 46893-47504 bp Ori: CAB5300636.1 Feature: domain Description: RlpA Location: 46965-47469 bp Feature: domain Description: RlpA Location: 46965-47469 bp Feature: gene Location: 48160-48804 bp Ori: CAB5300650.1 Feature: domain Description: YcbL-like_MBL-fold Location: 48172-48736 bp Feature: domain Description: YcbL-like_MBL-fold Location: 48172-4873 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK14673 (hypothetical protein; Provisional), RsmI (COG0313), RVT-GII, GIIM (pfam08388), RlpA (COG0797), YcbL-like_MBL-fold (cd07737)