myRT

myRT report for GCA_903545225.1_B.cereus_WGS_Assembly

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Seq: CAGVOV010000001.1 Bacillus cereus isolate Sample20 genome assembly, contig: tig00000001_pilon, whole genome shotgun sequence (5349845 bp)
Overview 1 RT 1: 1034414-1040874 bp 2 RT 2: 1106376-1113099 bp 3 RT 3: 1362084-1370034 bp 4 RT 4: 1662328-1665879 bp 5 RT 5: 1754871-1758994 bp 6 RT 6: 4075853-4079487 bp 7 RT 7: 4865797-4871156 bp Neighborhood of RT #1 [1034414, 1040882] Hydrolase_4 HTH_3 TPR RVT-GII GIIM RVT_N RVT-GII GrpB YbaK_EbsC Neighborhood of RT #2 [1106376, 1113116] PRK02487 stp RVT-GII GIIM RVT_N RVT-GII IDEAL IscR Neighborhood of RT #3 [1362084, 1370069] B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat RVT-GII HNHc B_ant_repeat B_ant_repeat B_ant_repeat CcdC Neighborhood of RT #4 [1662328, 1665879] YugN amiF RVT-GII HNHc Neighborhood of RT #5 [1754871, 1758994] mtnK RVT-GII HNHc Neighborhood of RT #6 [4075853, 4079487] RVT-GII HNHc TTHA1623-like_MBL-fold Neighborhood of RT #7 [4865797, 4871167] PP2C_2 asn_synth_AEB RVT-GII HNHc RVT-GII AsnB Feature: gene Location: 1034414-1035430 bp Feature: domain Description: Hydrolase_4 Location: 1034576-1035236 bp Feature: domain Description: Hydrolase_4 Location: 1 034576-1 035236 bp Feature: gene Location: 1035443-1036567 bp Feature: domain Description: HTH_3 Location: 1035473-1035635 bp Feature: domain Description: HTH_3 Location: 1 035473-1 035635 bp Feature: domain Description: TPR Location: 1036199-1036322 bp Feature: domain Description: TPR Location: 1 0361 99-1 036322 bp Feature: gene Location: 1036927-1037769 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1036942-1037116 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 036942-1 0371 1 6 bp Feature: domain Description: GIIM Note: maturase Location: 1037185-1037416 bp Feature: domain Description: GIIM Note: maturase Location: 1 0371 85-1 03741 6 bp Feature: gene Location: 1037766-1038572 bp Feature: RT Description: RVT_N Location: 1037808-1038045 bp Feature: RT Description: RVT_N Location: 1 037808-1 038045 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1038099-1038435 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 038099-1 038435 bp Feature: gene Location: 1039289-1039819 bp Feature: domain Description: GrpB Location: 1039301-1039775 bp Feature: domain Description: GrpB Location: 1 039301 -1 039775 bp Feature: gene Location: 1040406-1040882 bp Feature: domain Description: YbaK_EbsC Location: 1040424-1040874 bp Feature: domain Description: YbaK_EbsC Location: 1 040424-1 040874 bp Feature: gene Location: 1106376-1106867 bp Feature: domain Description: PRK02487 Location: 1106406-1106865 bp Feature: domain Description: PRK02487 Location: 1 1 06406-1 1 06865 bp Feature: gene Location: 1107426-1108841 bp Feature: domain Description: stp Location: 1107609-1108809 bp Feature: domain Description: stp Location: 1 1 07609-1 1 08809 bp Feature: gene Location: 1109818-1110828 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1109833-1110175 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 09833-1 1 1 01 75 bp Feature: domain Description: GIIM Note: maturase Location: 1110244-1110475 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 1 0244-1 1 1 0475 bp Feature: gene Location: 1110833-1111462 bp Feature: RT Description: RVT_N Location: 1110875-1111112 bp Feature: RT Description: RVT_N Location: 1 1 1 0875-1 1 1 1 1 1 2 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1111166-1111358 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 1 1 1 66-1 1 1 1 358 bp Feature: gene Location: 1112251-1112586 bp Feature: domain Description: IDEAL Location: 1112455-1112551 bp Feature: domain Description: IDEAL Location: 1 1 1 2455-1 1 1 2551 bp Feature: gene Location: 1112703-1113116 bp Feature: domain Description: IscR Location: 1112706-1113099 bp Feature: domain Description: IscR Location: 1 1 1 2706-1 1 1 3099 bp Feature: gene Location: 1362084-1362239 bp Feature: gene Location: 1359847-1365420 bp Feature: domain Description: B_ant_repeat Location: 1359853-1359982 bp Feature: domain Description: B_ant_repeat Location: 1 359853-1 359982 bp Feature: domain Description: B_ant_repeat Location: 1360222-1360375 bp Feature: domain Description: B_ant_repeat Location: 1 360222-1 360375 bp Feature: domain Description: B_ant_repeat Location: 1360618-1360774 bp Feature: domain Description: B_ant_repeat Location: 1 36061 8-1 360774 bp Feature: domain Description: B_ant_repeat Location: 1361014-1361170 bp Feature: domain Description: B_ant_repeat Location: 1 361 01 4-1 361 1 70 bp Feature: domain Description: B_ant_repeat Location: 1361410-1361566 bp Feature: domain Description: B_ant_repeat Location: 1 361 41 0-1 361 566 bp Feature: domain Description: B_ant_repeat Location: 1361806-1361959 bp Feature: domain Description: B_ant_repeat Location: 1 361 806-1 361 959 bp Feature: domain Description: B_ant_repeat Location: 1362202-1362358 bp Feature: domain Description: B_ant_repeat Location: 1 362202-1 362358 bp Feature: domain Description: B_ant_repeat Location: 1362598-1362754 bp Feature: domain Description: B_ant_repeat Location: 1 362598-1 362754 bp Feature: domain Description: B_ant_repeat Location: 1362994-1363150 bp Feature: domain Description: B_ant_repeat Location: 1 362994-1 3631 50 bp Feature: domain Description: B_ant_repeat Location: 1363390-1363543 bp Feature: domain Description: B_ant_repeat Location: 1 363390-1 363543 bp Feature: domain Description: B_ant_repeat Location: 1363786-1363942 bp Feature: domain Description: B_ant_repeat Location: 1 363786-1 363942 bp Feature: domain Description: B_ant_repeat Location: 1364182-1364338 bp Feature: domain Description: B_ant_repeat Location: 1 3641 82-1 364338 bp Feature: domain Description: B_ant_repeat Location: 1364578-1364734 bp Feature: domain Description: B_ant_repeat Location: 1 364578-1 364734 bp Feature: domain Description: B_ant_repeat Location: 1364974-1365127 bp Feature: domain Description: B_ant_repeat Location: 1 364974-1 3651 27 bp Feature: gene Location: 1365589-1367517 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1365910-1366645 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 36591 0-1 366645 bp Feature: domain Description: HNHc Note: nucleases Location: 1367236-1367401 bp Feature: domain Description: HNHc Note: nucleases Location: 1 367236-1 367401 bp Feature: gene Location: 1368219-1369499 bp Feature: domain Description: B_ant_repeat Location: 1368297-1368408 bp Feature: domain Description: B_ant_repeat Location: 1 368297-1 368408 bp Feature: domain Description: B_ant_repeat Location: 1368648-1368804 bp Feature: domain Description: B_ant_repeat Location: 1 368648-1 368804 bp Feature: domain Description: B_ant_repeat Location: 1369047-1369203 bp Feature: domain Description: B_ant_repeat Location: 1 369047-1 369203 bp Feature: gene Location: 1369563-1370069 bp Feature: domain Description: CcdC Location: 1369572-1370034 bp Feature: domain Description: CcdC Location: 1 369572-1 370034 bp Feature: gene Location: 1662328-1662693 bp Feature: domain Description: YugN Location: 1662346-1662595 bp Feature: domain Description: YugN Location: 1 662346-1 662595 bp Feature: gene Location: 1662740-1663363 bp Feature: domain Description: amiF Location: 1662743-1663358 bp Feature: domain Description: amiF Location: 1 662743-1 663358 bp Feature: gene Location: 1663480-1664928 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1663483-1664101 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 663483-1 6641 01 bp Feature: domain Description: HNHc Note: nucleases Location: 1664680-1664812 bp Feature: domain Description: HNHc Note: nucleases Location: 1 664680-1 66481 2 bp Feature: gene Location: 1665114-1665311 bp Feature: gene Location: 1665703-1665879 bp Feature: gene Location: 1754871-1756052 bp Feature: domain Description: mtnK Location: 1754874-1756032 bp Feature: domain Description: mtnK Location: 1 754874-1 756032 bp Feature: gene Location: 1756347-1756496 bp Feature: gene Location: 1756597-1757886 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1756639-1757059 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 756639-1 757059 bp Feature: domain Description: HNHc Note: nucleases Location: 1757638-1757770 bp Feature: domain Description: HNHc Note: nucleases Location: 1 757638-1 757770 bp Feature: gene Location: 1758229-1758426 bp Feature: gene Location: 1758818-1758994 bp Feature: gene Location: 4075853-4076029 bp Feature: gene Location: 4076421-4076618 bp Feature: gene Location: 4076962-4078251 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4077004-4077424 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4077004-4077424 bp Feature: domain Description: HNHc Note: nucleases Location: 4078003-4078135 bp Feature: domain Description: HNHc Note: nucleases Location: 4078003-40781 35 bp Feature: gene Location: 4078491-4078904 bp Feature: domain Description: TTHA1623-like_MBL-fold Location: 4078494-4078890 bp Feature: domain Description: TTHA1 623-like_MBL-fold Location: 4078494-4078890 bp Feature: gene Location: 4079353-4079487 bp Feature: gene Location: 4865797-4866624 bp Feature: domain Description: PP2C_2 Location: 4866169-4866508 bp Feature: domain Description: PP2C_2 Location: 48661 69-4866508 bp Feature: gene Location: 4866667-4868349 bp Feature: domain Description: asn_synth_AEB Location: 4866697-4868125 bp Feature: domain Description: asn_synth_AEB Location: 4866697-48681 25 bp Feature: gene Location: 4868430-4869722 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4868475-4868895 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4868475-4868895 bp Feature: domain Description: HNHc Note: nucleases Location: 4869474-4869606 bp Feature: domain Description: HNHc Note: nucleases Location: 4869474-4869606 bp Feature: gene Location: 4869700-4870260 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4870000-4870252 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4870000-4870252 bp Feature: gene Location: 4870653-4870829 bp Feature: gene Location: 4870976-4871167 bp Feature: domain Description: AsnB Location: 4870979-4871156 bp Feature: domain Description: AsnB Location: 4870979-4871 1 56 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Hydrolase_4 (pfam12146), HTH_3 (pfam01381), TPR (smart00028), RVT-GII, GIIM (pfam08388), RVT_N (pfam13655), GrpB (pfam04229), YbaK_EbsC (TIGR00011), PRK02487 (heme-degrading domain-containing protein), stp (TIGR00814)
IDEAL (smart00914), IscR (TIGR02010), HNHc (smart00507), B_ant_repeat (TIGR01451), CcdC (COG4846), YugN (pfam08868), amiF (PRK13287), mtnK (PRK09550), TTHA1623-like_MBL-fold (cd16322), PP2C_2 (pfam13672)
asn_synth_AEB (TIGR01536), AsnB (COG0367)

Seq: CAGVOV010000002.1 Bacillus cereus isolate Sample20 genome assembly, contig: tig00000002_pilon, whole genome shotgun sequence (417224 bp)
Overview 1 RT 1: 77577-84963 bp 2 RT 2: 108699-112444 bp 3 RT 3: 126932-133373 bp 4 RT 4: 140950-149535 bp 5 RT 5: 167093-170511 bp Neighborhood of RT #1 [77577, 84977] RVT-GII GIIM RVT_N RVT-GII nuc_hydro DEXXQc_Upf1-like KOG1803 Neighborhood of RT #2 [108699, 112461] RVT-GII HNHc E1_enzyme_family Neighborhood of RT #3 [126932, 133373] DUF3854 RVT-GII GIIM HNHc Neighborhood of RT #4 [140950, 149633] Replic_Relax RVT-GII Intron_maturas2 HNHc TraG-D_C xerC Neighborhood of RT #5 [167093, 170627] RVT-GII group_II_RT_mat HNHc AAA_10 Feature: gene Location: 77577-77804 bp Feature: gene Location: 77970-78212 bp Feature: gene Location: 78413-79132 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 78416-78479 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 78416-78479 bp Feature: domain Description: GIIM Note: maturase Location: 78548-78779 bp Feature: domain Description: GIIM Note: maturase Location: 78548-78779 bp Feature: gene Location: 79123-80058 bp Feature: RT Description: RVT_N Location: 79165-79402 bp Feature: RT Description: RVT_N Location: 79165-79402 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 79456-80047 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 79456-80047 bp Feature: gene Location: 80778-81749 bp Feature: domain Description: nuc_hydro Location: 80814-81720 bp Feature: domain Description: nuc_hydro Location: 80814-8172 0 bp Feature: gene Location: 82161-84977 bp Feature: domain Description: DEXXQc_Upf1-like Location: 83220-84429 bp Feature: domain Description: DEXXQc_Upf1-like Location: 832 2 0-8442 9 bp Feature: domain Description: KOG1803 Location: 84645-84963 bp Feature: domain Description: KOG1803 Location: 84645-84963 bp Feature: gene Location: 108699-108827 bp Feature: gene Location: 108889-109392 bp Feature: gene Location: 109480-111360 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 109810-110539 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 109810-110539 bp Feature: domain Description: HNHc Note: nucleases Location: 111097-111247 bp Feature: domain Description: HNHc Note: nucleases Location: 111097-1112 47 bp Feature: gene Location: 111632-111766 bp Feature: gene Location: 112060-112461 bp Feature: domain Description: E1_enzyme_family Location: 112108-112444 bp Feature: domain Description: E1_enzyme_family Location: 112 108-112 444 bp Feature: gene Location: 126932-127162 bp Feature: gene Location: 127655-128926 bp Feature: domain Description: DUF3854 Location: 128573-128894 bp Feature: domain Description: DUF3854 Location: 12 8573-12 8894 bp Feature: gene Location: 128931-130826 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 129297-129996 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 92 97-12 9996 bp Feature: domain Description: GIIM Note: maturase Location: 130080-130323 bp Feature: domain Description: GIIM Note: maturase Location: 130080-13032 3 bp Feature: domain Description: HNHc Note: nucleases Location: 130569-130707 bp Feature: domain Description: HNHc Note: nucleases Location: 130569-130707 bp Feature: gene Location: 130973-131128 bp Feature: gene Location: 131814-133373 bp Feature: gene Location: 140950-142500 bp Feature: domain Description: Replic_Relax Location: 141046-141769 bp Feature: domain Description: Replic_Relax Location: 141046-141769 bp Feature: gene Location: 142472-144160 bp Feature: gene Location: 144774-146591 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 145038-145869 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 145038-145869 bp Feature: domain Description: Intron_maturas2 Location: 145947-146241 bp Feature: domain Description: Intron_maturas2 Location: 145947-1462 41 bp Feature: domain Description: HNHc Note: nucleases Location: 146388-146565 bp Feature: domain Description: HNHc Note: nucleases Location: 146388-146565 bp Feature: gene Location: 146695-148092 bp Feature: domain Description: TraG-D_C Location: 146839-147202 bp Feature: domain Description: TraG-D_C Location: 146839-1472 02 bp Feature: gene Location: 148659-149633 bp Feature: domain Description: xerC Location: 148686-149535 bp Feature: domain Description: xerC Location: 148686-149535 bp Feature: gene Location: 167093-167269 bp Feature: gene Location: 167661-167858 bp Feature: gene Location: 168044-168757 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 168047-168614 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 168047-168614 bp Feature: gene Location: 168718-169491 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 168721-168925 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 16872 1-16892 5 bp Feature: domain Description: HNHc Note: nucleases Location: 169243-169375 bp Feature: domain Description: HNHc Note: nucleases Location: 1692 43-169375 bp Feature: gene Location: 169749-170627 bp Feature: domain Description: AAA_10 Location: 169755-170511 bp Feature: domain Description: AAA_10 Location: 169755-170511 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), RVT_N (pfam13655), nuc_hydro (cl00226), DEXXQc_Upf1-like (cd17934), KOG1803 (KOG1803, DNA helicase ), HNHc (smart00507), E1_enzyme_family (cl22428), DUF3854 (pfam12965), Replic_Relax (pfam13814)
Intron_maturas2 (pfam01348), TraG-D_C (pfam12696), xerC (PRK01287), group_II_RT_mat (TIGR04416), AAA_10 (pfam12846)