myRT

myRT report for GCA_903645315.1_Q1083

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Seq: CAHJXL010000001.1 Victivallis sp. Marseille-Q1083 genome assembly, contig: contig00001, whole genome shotgun sequence (3878349 bp)
Overview 1 RT 1: 44527-52401 bp 2 RT 2: 621037-627896 bp 3 RT 3: 644796-649296 bp 4 RT 4: 762680-766817 bp 5 RT 5: 1880744-1885270 bp 6 RT 6: 3238286-3243487 bp Neighborhood of RT #1 [44527, 53111] PulG WHTH_GntR PurR RVT-GII GIIM Glyco_hydro_42 Glyco_hydro_42M Neighborhood of RT #2 [621037, 627907] Peptidase_S9 RVT-GII GIIM PRK13805 Neighborhood of RT #3 [644796, 649424] COG4277 PRK05420 RVT-GII GIIM Nuc_deoxyri_tr2 Neighborhood of RT #4 [762680, 766817] beta_clamp beta_clamp RVT-GII GIIM Neighborhood of RT #5 [1880744, 1885290] PRK02947 RVT-GII GIIM Zn_peptidase_2 HTH_18 Neighborhood of RT #6 [3238286, 3243540] WrbA RVT-GII GIIM DUF454 PulG KatE Feature: gene Location: 44527-45216 bp Feature: domain Description: PulG Location: 44542-44752 bp Feature: domain Description: PulG Location: 44542-44752 bp Feature: gene Location: 45245-46363 bp Feature: domain Description: WHTH_GntR Location: 45281-45476 bp Feature: domain Description: WHTH_GntR Location: 45281 -45476 bp Feature: domain Description: PurR Location: 45581-46346 bp Feature: domain Description: PurR Location: 45581 -46346 bp Feature: gene Location: 46572-47960 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46890-47505 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46890-47505 bp Feature: domain Description: GIIM Note: maturase Location: 47565-47775 bp Feature: domain Description: GIIM Note: maturase Location: 47565-47775 bp Feature: gene Location: 48035-48331 bp Feature: gene Location: 48456-53111 bp Feature: domain Description: Glyco_hydro_42 Location: 51189-51663 bp Feature: domain Description: Glyco_hydro_42 Location: 51 1 89-51 663 bp Feature: domain Description: Glyco_hydro_42M Location: 52170-52401 bp Feature: domain Description: Glyco_hydro_42M Location: 521 70-52401 bp Feature: gene Location: 621037-622740 bp Feature: domain Description: Peptidase_S9 Location: 621517-621922 bp Feature: domain Description: Peptidase_S9 Location: 621 51 7-621 922 bp Feature: gene Location: 622901-623182 bp Feature: gene Location: 623411-624799 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 623729-624344 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 623729-624344 bp Feature: domain Description: GIIM Note: maturase Location: 624404-624614 bp Feature: domain Description: GIIM Note: maturase Location: 624404-62461 4 bp Feature: gene Location: 624798-625163 bp Feature: gene Location: 625298-627907 bp Feature: domain Description: PRK13805 Location: 625322-627896 bp Feature: domain Description: PRK1 3805 Location: 625322-627896 bp Feature: gene Location: 644796-645917 bp Feature: domain Description: COG4277 Location: 644808-645912 bp Feature: domain Description: COG4277 Location: 644808-64591 2 bp Feature: gene Location: 646067-646759 bp Feature: domain Description: PRK05420 Location: 646082-646754 bp Feature: domain Description: PRK05420 Location: 646082-646754 bp Feature: gene Location: 646897-648285 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 647215-647830 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64721 5-647830 bp Feature: domain Description: GIIM Note: maturase Location: 647890-648100 bp Feature: domain Description: GIIM Note: maturase Location: 647890-6481 00 bp Feature: gene Location: 648284-648649 bp Feature: gene Location: 648999-649424 bp Feature: domain Description: Nuc_deoxyri_tr2 Location: 649020-649296 bp Feature: domain Description: Nuc_deoxyri_tr2 Location: 649020-649296 bp Feature: gene Location: 762680-763111 bp Feature: gene Location: 763192-764466 bp Feature: domain Description: beta_clamp Location: 763198-763456 bp Feature: domain Description: beta_clamp Location: 7631 98-763456 bp Feature: domain Description: beta_clamp Location: 763765-764020 bp Feature: domain Description: beta_clamp Location: 763765-764020 bp Feature: gene Location: 764566-765954 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 764884-765499 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 764884-765499 bp Feature: domain Description: GIIM Note: maturase Location: 765559-765769 bp Feature: domain Description: GIIM Note: maturase Location: 765559-765769 bp Feature: gene Location: 766024-766320 bp Feature: gene Location: 766548-766817 bp Feature: gene Location: 1880744-1881481 bp Feature: domain Description: PRK02947 Location: 1880753-1881473 bp Feature: domain Description: PRK02947 Location: 1 880753-1 881 473 bp Feature: gene Location: 1881776-1882072 bp Feature: gene Location: 1882147-1883535 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1882465-1883080 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 882465-1 883080 bp Feature: domain Description: GIIM Note: maturase Location: 1883140-1883350 bp Feature: domain Description: GIIM Note: maturase Location: 1 8831 40-1 883350 bp Feature: gene Location: 1883628-1884323 bp Feature: domain Description: Zn_peptidase_2 Location: 1883652-1884294 bp Feature: domain Description: Zn_peptidase_2 Location: 1 883652-1 884294 bp Feature: gene Location: 1884421-1885290 bp Feature: domain Description: HTH_18 Location: 1885033-1885270 bp Feature: domain Description: HTH_1 8 Location: 1 885033-1 885270 bp Feature: gene Location: 3238286-3238891 bp Feature: domain Description: WrbA Location: 3238292-3238865 bp Feature: domain Description: WrbA Location: 3238292-3238865 bp Feature: gene Location: 3239022-3239318 bp Feature: gene Location: 3239387-3240775 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3239705-3240320 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3239705-3240320 bp Feature: domain Description: GIIM Note: maturase Location: 3240380-3240590 bp Feature: domain Description: GIIM Note: maturase Location: 3240380-3240590 bp Feature: gene Location: 3240861-3242024 bp Feature: domain Description: DUF454 Location: 3240882-3241215 bp Feature: domain Description: DUF454 Location: 3240882-3241 21 5 bp Feature: domain Description: PulG Location: 3241230-3241614 bp Feature: domain Description: PulG Location: 3241 230-3241 61 4 bp Feature: gene Location: 3242026-3243540 bp Feature: domain Description: KatE Location: 3242035-3243487 bp Feature: domain Description: KatE Location: 3242035-3243487 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PulG (pfam11773), WHTH_GntR (cd07377), PurR (COG1609), RVT-GII, GIIM (pfam08388), Glyco_hydro_42 (pfam02449), Glyco_hydro_42M (pfam08532), Peptidase_S9 (pfam00326), PRK13805 (bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional), COG4277 (Predicted DNA-binding protein with the Helix-hairpin-helix motif )
PRK05420 (aquaporin Z; Provisional), Nuc_deoxyri_tr2 (pfam15891), beta_clamp (cl29549), PRK02947 (sugar isomerase domain-containing protein), Zn_peptidase_2 (pfam04298), HTH_18 (pfam12833), WrbA (COG0655), DUF454 (pfam04304), KatE (COG0753)

Seq: CAHJXL010000002.1 Victivallis sp. Marseille-Q1083 genome assembly, contig: contig00002, whole genome shotgun sequence (937891 bp)
Overview 1 RT 1: 579507-584071 bp 2 RT 2: 743264-748806 bp Neighborhood of RT #1 [579507, 584071] AAA-ATPase_like PDDEXK_9 RVT-GII GIIM Neighborhood of RT #2 [743264, 748814] MviM RVT-GII GIIM COG3547 PEBP_bact_arch Feature: gene Location: 579507-581075 bp Feature: domain Description: AAA-ATPase_like Location: 579543-580353 bp Feature: domain Description: AAA-ATPase_like Location: 579543-580353 bp Feature: domain Description: PDDEXK_9 Location: 580782-581052 bp Feature: domain Description: PDDEXK_9 Location: 580782 -581052 bp Feature: gene Location: 581453-581749 bp Feature: gene Location: 581861-583207 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 582137-582752 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 582 137-582 752 bp Feature: domain Description: GIIM Note: maturase Location: 582812-583022 bp Feature: domain Description: GIIM Note: maturase Location: 582 812 -58302 2 bp Feature: gene Location: 583355-583696 bp Feature: gene Location: 583718-584071 bp Feature: gene Location: 743264-744400 bp Feature: domain Description: MviM Location: 743279-744353 bp Feature: domain Description: MviM Location: 7432 79-744353 bp Feature: gene Location: 744526-745254 bp Feature: gene Location: 744932-746278 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 745208-745823 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7452 08-74582 3 bp Feature: domain Description: GIIM Note: maturase Location: 745883-746093 bp Feature: domain Description: GIIM Note: maturase Location: 745883-746093 bp Feature: gene Location: 746768-747817 bp Feature: domain Description: COG3547 Location: 746879-747776 bp Feature: domain Description: COG3547 Location: 746879-747776 bp Feature: gene Location: 748227-748814 bp Feature: domain Description: PEBP_bact_arch Location: 748350-748806 bp Feature: domain Description: PEBP_bact_arch Location: 748350-748806 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA-ATPase_like (pfam09820), PDDEXK_9 (pfam08011), RVT-GII, GIIM (pfam08388), MviM (COG0673), COG3547 (Transposase ), PEBP_bact_arch (cd00865)