myRT

myRT report for GCA_903815575.1_SAKP01

Download annotations/find similar RTs

Seq: CAIJAJ010000021.1 Klebsiella pneumoniae strain SAKP01 genome assembly, contig: NODE_21_length_82537_cov_29.606148, whole genome shotgun sequence (82537 bp)
Overview 1 RT 1: 32232-37354 bp Neighborhood of RT #1 [32232, 37365] HTH_XRE HTH_XRE RVT-UG2 traC_PFL_4706 Feature: gene Location: 32232-32462 bp Feature: domain Description: HTH_XRE Location: 32274-32442 bp Feature: domain Description: HTH_XRE Location: 32274-32442 bp Feature: gene Location: 32545-32772 bp Feature: domain Description: HTH_XRE Location: 32587-32749 bp Feature: domain Description: HTH_XRE Location: 32587-32749 bp Feature: gene Location: 32970-34247 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 33168-33954 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 331 68-33954 bp Feature: gene Location: 34395-34595 bp Feature: gene Location: 34735-37365 bp Feature: domain Description: traC_PFL_4706 Location: 34774-37354 bp Feature: domain Description: traC_PFL_4706 Location: 34774-37354 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-UG2, traC_PFL_4706 (TIGR03744)

Seq: CAIJAJ010000080.1 Klebsiella pneumoniae strain SAKP01 genome assembly, contig: NODE_80_length_3603_cov_2.786160, whole genome shotgun sequence (3603 bp)
Overview 1 RT 1: 2-3589 bp Neighborhood of RT #1 [2, 3600] RVT-UG4 FimD Feature: gene Location: 2-1996 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 410-854 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 410-854 bp Feature: gene Location: 1996-3600 bp Feature: domain Description: FimD Location: 2005-3589 bp Feature: domain Description: FimD Location: 2 005-3589 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG4, FimD (COG3188)

Seq: CAIJAJ010000120.1 Klebsiella pneumoniae strain SAKP01 genome assembly, contig: NODE_120_length_1914_cov_89.733805, whole genome shotgun sequence (1914 bp)
Overview 1 RT 1: 2-1463 bp Neighborhood of RT #1 [2, 1855] RVT-GII Feature: gene Location: 2-214 bp Feature: gene Location: 368-1855 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 773-1463 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 773 -1463 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII