myRT

myRT report for GCA_903832425.1_freshwater_MAG_---_AM-lipid-02-D6_bin-071

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Seq: CAILBM010000010.1 Akkermansiaceae bacterium isolate AM-lipid-02-D6_bin-071 genome assembly, contig: bin-071:010/405, whole genome shotgun sequence (18400 bp)
Overview 1 RT 1: 12964-17988 bp Neighborhood of RT #1 [12964, 18053] PP2C_2 RVT-CRISPR Cas1_I-II-III Cas2_I_II_III Feature: gene Location: 12964-14049 bp Feature: domain Description: PP2C_2 Location: 13030-13615 bp Feature: domain Description: PP2C_2 Location: 1 3030-1 361 5 bp Feature: gene Location: 14239-15390 bp Feature: gene Location: 15392-16681 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 15605-16196 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 1 5605-1 61 96 bp Feature: gene Location: 16684-17670 bp Feature: domain Description: Cas1_I-II-III Location: 16687-17599 bp Feature: domain Description: Cas1 _I-II-III Location: 1 6687-1 7599 bp Feature: gene Location: 17667-18053 bp Feature: domain Description: Cas2_I_II_III Location: 17787-17988 bp Feature: domain Description: Cas2_I_II_III Location: 1 7787-1 7988 bp Sorry, your browser does not support inline SVG.
Associated domains:Seq: CAILBM010000239.1 Akkermansiaceae bacterium isolate AM-lipid-02-D6_bin-071 genome assembly, contig: bin-071:239/405, whole genome shotgun sequence (5526 bp)
Overview 1 RT 1: 115-4993 bp Neighborhood of RT #1 [115, 5061] Cas2_I_II_III RVT-CRISPR Cas1_I-II-III Feature: gene Location: 115-1845 bp Feature: gene Location: 2165-2452 bp Feature: domain Description: Cas2_I_II_III Location: 2186-2399 bp Feature: domain Description: Cas2 _I_II_III Location: 2 186-2 399 bp Feature: gene Location: 2449-5061 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 3388-3991 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 3388-3991 bp Feature: domain Description: Cas1_I-II-III Location: 4078-4993 bp Feature: domain Description: Cas1_I-II-III Location: 4078-4993 bp Sorry, your browser does not support inline SVG.
Associated domains:Seq: CAILBM010000262.1 Akkermansiaceae bacterium isolate AM-lipid-02-D6_bin-071 genome assembly, contig: bin-071:262/405, whole genome shotgun sequence (74696 bp)
Overview 1 RT 1: 25898-31207 bp Neighborhood of RT #1 [25898, 31275] COG2958 LolA_like RVT-GII GIIM RVT-GII COG4249 TPR Feature: gene Location: 25898-26887 bp Feature: domain Description: COG2958 Location: 26306-26636 bp Feature: domain Description: COG2958 Location: 263 06-2663 6 bp Feature: gene Location: 27060-27782 bp Feature: domain Description: LolA_like Location: 27354-27708 bp Feature: domain Description: LolA_like Location: 273 54-27708 bp Feature: gene Location: 28013-28693 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28034-28310 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2803 4-283 10 bp Feature: domain Description: GIIM Note: maturase Location: 28370-28577 bp Feature: domain Description: GIIM Note: maturase Location: 283 70-28577 bp Feature: gene Location: 28636-29406 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28984-29338 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28984-293 3 8 bp Feature: gene Location: 29610-29816 bp Feature: gene Location: 29896-31275 bp Feature: domain Description: COG4249 Location: 29968-30736 bp Feature: domain Description: COG4249 Location: 29968-3 073 6 bp Feature: domain Description: TPR Location: 31021-31207 bp Feature: domain Description: TPR Location: 3 1021-3 1207 bp Sorry, your browser does not support inline SVG.
Associated domains:Seq: CAILBM010000294.1 Akkermansiaceae bacterium isolate AM-lipid-02-D6_bin-071 genome assembly, contig: bin-071:294/405, whole genome shotgun sequence (5427 bp)
Overview 1 RT 1: 43-2976 bp Neighborhood of RT #1 [43, 2976] RVT-GII GIIM Feature: gene Location: 43-882 bp Feature: gene Location: 861-2207 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1146-1812 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 114 6-1812 bp Feature: domain Description: GIIM Note: maturase Location: 1908-2097 bp Feature: domain Description: GIIM Note: maturase Location: 1908-2097 bp Feature: gene Location: 2279-2485 bp Feature: gene Location: 2575-2976 bp Sorry, your browser does not support inline SVG.
Associated domains:Seq: CAILBM010000333.1 Akkermansiaceae bacterium isolate AM-lipid-02-D6_bin-071 genome assembly, contig: bin-071:333/405, whole genome shotgun sequence (20264 bp)
Overview 1 RT 1: 3-4122 bp Neighborhood of RT #1 [3, 6929] NHL_like_1 RVT-Retrons SWIM WGR_DNA_ligase Feature: gene Location: 3-239 bp Feature: domain Description: NHL_like_1 Location: 9-111 bp Feature: domain Description: NHL_like_1 Location: 9-111 bp Feature: gene Location: 409-1947 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 949-1567 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 949-15 67 bp Feature: gene Location: 2248-3798 bp Feature: domain Description: SWIM Location: 3673-3760 bp Feature: domain Description: SWIM Location: 3673-3760 bp Feature: gene Location: 3891-6929 bp Feature: domain Description: WGR_DNA_ligase Location: 3909-4122 bp Feature: domain Description: WGR_DNA_ligase Location: 3909-4122 bp Sorry, your browser does not support inline SVG.
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