myRT

myRT report for GCA_903931075.1_4159_15

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Seq: CAIZBC010000033.1 Salmonella enterica isolate 4159_15 genome assembly, contig: NODE_5_length_199274_cov_5.36471, whole genome shotgun sequence (199274 bp)
Overview 1 RT 1: 128270-134142 bp Neighborhood of RT #1 [128270, 134162] DUF5375 Prim_Zn_Ribbon COG3378 RVT-Retrons TIR_2 HTH_Tnp_1 HTH_Hin_like Feature: gene Location: 128270-128590 bp Feature: domain Description: DUF5375 Location: 128273-128588 bp Feature: domain Description: DUF5375 Location: 1 28273-1 28588 bp Feature: gene Location: 128605-130938 bp Feature: domain Description: Prim_Zn_Ribbon Location: 128695-128803 bp Feature: domain Description: Prim_Zn_Ribbon Location: 1 28695-1 28803 bp Feature: domain Description: COG3378 Location: 129421-130930 bp Feature: domain Description: COG3378 Location: 1 29421 -1 30930 bp Feature: gene Location: 131527-133158 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 131842-132439 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 31 842-1 32439 bp Feature: domain Description: TIR_2 Location: 132763-133123 bp Feature: domain Description: TIR_2 Location: 1 32763-1 331 23 bp Feature: gene Location: 133208-133645 bp Feature: domain Description: HTH_Tnp_1 Location: 133223-133340 bp Feature: domain Description: HTH_Tnp_1 Location: 1 33223-1 33340 bp Feature: gene Location: 134031-134162 bp Feature: domain Description: HTH_Hin_like Location: 134037-134142 bp Feature: domain Description: HTH_Hin_like Location: 1 34037-1 341 42 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF5375 (pfam17345), Prim_Zn_Ribbon (smart00778), COG3378 (Phage- or plasmid-associated DNA primase ), RVT-Retrons, TIR_2 (pfam13676), HTH_Tnp_1 (pfam01527), HTH_Hin_like (cd00569)