myRT

myRT report for GCA_903932115.1_ROAR-430

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Seq: CAIZEX010000001.1 Escherichia coli strain O109:H45 / fimH1039 / 10431 (ST Warwick) / B2 genome assembly, contig: NODE_1_length_394435_cov_41.774205, whole genome shotgun sequence (394435 bp)
Overview 1 RT 1: 212227-217568 bp Neighborhood of RT #1 [212227, 217568] TIGR02646 COG3950 RVT-Retrons Feature: gene Location: 212227-212874 bp Feature: domain Description: TIGR02646 Location: 212296-212683 bp Feature: domain Description: TIGR02646 Location: 21 2296-21 2683 bp Feature: gene Location: 212877-214532 bp Feature: domain Description: COG3950 Location: 213078-214500 bp Feature: domain Description: COG3950 Location: 21 3078-21 4500 bp Feature: gene Location: 214529-215572 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 214742-215339 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 21 4742-21 5339 bp Feature: gene Location: 216156-216314 bp Feature: gene Location: 216570-217568 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TIGR02646 (TIGR02646 family protein), COG3950 (Predicted ATP-binding protein involved in virulence ), RVT-Retrons

Seq: CAIZEX010000015.1 Escherichia coli strain O109:H45 / fimH1039 / 10431 (ST Warwick) / B2 genome assembly, contig: NODE_15_length_102507_cov_31.329032, whole genome shotgun sequence (102507 bp)
Overview 1 RT 1: 28823-33158 bp Neighborhood of RT #1 [28823, 33160] PRK11611 PRK05015 RVT-GII GIIM PRK10721 Feature: gene Location: 28823-29599 bp Feature: domain Description: PRK11611 Location: 28856-29588 bp Feature: domain Description: PRK11611 Location: 2 8856-2 9588 bp Feature: gene Location: 29718-31001 bp Feature: domain Description: PRK05015 Location: 29733-30996 bp Feature: domain Description: PRK05015 Location: 2 9733-30996 bp Feature: gene Location: 31100-32488 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31430-32048 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31430-32 048 bp Feature: domain Description: GIIM Note: maturase Location: 32096-32327 bp Feature: domain Description: GIIM Note: maturase Location: 32 096-32 32 7 bp Feature: gene Location: 32519-32716 bp Feature: gene Location: 32960-33160 bp Feature: domain Description: PRK10721 Location: 32963-33158 bp Feature: domain Description: PRK1072 1 Location: 32 963-33158 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK11611 (enhanced serine sensitivity protein SseB; Provisional), PRK05015 (aminopeptidase B; Provisional), RVT-GII, GIIM (pfam08388), PRK10721 (hypothetical protein; Provisional)