myRT

myRT report for GCA_903932245.1_QUC093

Download annotations/find similar RTs

Seq: CAIZFN010000025.1 Escherichia coli strain Unknown:H6 / ND / 747 (ST Warwick) / F genome assembly, contig: NODE_25_length_68435_cov_16.053464, whole genome shotgun sequence (68435 bp)
Overview 1 RT 1: 53720-57602 bp Neighborhood of RT #1 [53720, 57607] rph pyrE RVT-Retrons slmA dut Feature: gene Location: 53720-54436 bp Feature: domain Description: rph Location: 53723-54431 bp Feature: domain Description: rph Location: 53723-54431 bp Feature: gene Location: 54487-55143 bp Feature: domain Description: pyrE Location: 54505-55138 bp Feature: domain Description: pyrE Location: 54505-551 38 bp Feature: gene Location: 55441-56400 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 55576-56125 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 55576-561 25 bp Feature: gene Location: 56446-57042 bp Feature: domain Description: slmA Location: 56452-57028 bp Feature: domain Description: slmA Location: 56452-57028 bp Feature: gene Location: 57149-57607 bp Feature: domain Description: dut Location: 57155-57602 bp Feature: domain Description: dut Location: 571 55-57602 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rph (PRK00173), pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480), dut (TIGR00576)

Seq: CAIZFN010000026.1 Escherichia coli strain Unknown:H6 / ND / 747 (ST Warwick) / F genome assembly, contig: NODE_26_length_67951_cov_15.752934, whole genome shotgun sequence (67951 bp)
Overview 1 RT 1: 24392-27447 bp Neighborhood of RT #1 [24392, 27447] RVT-GII RVT-GII GIIM Feature: gene Location: 24392-25297 bp Feature: gene Location: 25555-25752 bp Feature: gene Location: 25783-26322 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26113-26191 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 6113-2 6191 bp Feature: gene Location: 26350-26871 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26356-26638 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 6356-2 6638 bp Feature: domain Description: GIIM Note: maturase Location: 26686-26866 bp Feature: domain Description: GIIM Note: maturase Location: 2 6686-2 6866 bp Feature: gene Location: 26970-27149 bp Feature: gene Location: 27259-27447 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: CAIZFN010000032.1 Escherichia coli strain Unknown:H6 / ND / 747 (ST Warwick) / F genome assembly, contig: NODE_32_length_52870_cov_25.072958, whole genome shotgun sequence (52870 bp)
Overview 1 RT 1: 27468-31439 bp Neighborhood of RT #1 [27468, 31444] RVT-GII Intron_maturas2 HNHc PRK13732 DUF905 Feature: gene Location: 27468-27803 bp Feature: gene Location: 28256-28465 bp Feature: gene Location: 28600-30501 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28867-29698 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28867-29698 bp Feature: domain Description: Intron_maturas2 Location: 29812-30070 bp Feature: domain Description: Intron_maturas2 Location: 29812-3 0070 bp Feature: domain Description: HNHc Note: nucleases Location: 30244-30406 bp Feature: domain Description: HNHc Note: nucleases Location: 3 0244-3 0406 bp Feature: gene Location: 30696-31148 bp Feature: domain Description: PRK13732 Location: 30702-31146 bp Feature: domain Description: PRK13 73 2 Location: 3 0702-3 1146 bp Feature: gene Location: 31211-31444 bp Feature: domain Description: DUF905 Location: 31241-31439 bp Feature: domain Description: DUF905 Location: 3 1241-3 143 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PRK13732 (single-stranded DNA-binding protein; Provisional), DUF905 (pfam06006)

Seq: CAIZFN010000116.1 Escherichia coli strain Unknown:H6 / ND / 747 (ST Warwick) / F genome assembly, contig: NODE_116_length_1485_cov_65.768041, whole genome shotgun sequence (1485 bp)
Overview 1 RT 1: 2-1482 bp Neighborhood of RT #1 [2, 1482] RVT-GII Feature: gene Location: 2-829 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 275-731 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 275-731 bp Feature: gene Location: 1123-1482 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: CAIZFN010000133.1 Escherichia coli strain Unknown:H6 / ND / 747 (ST Warwick) / F genome assembly, contig: NODE_133_length_786_cov_44.440061, whole genome shotgun sequence (786 bp)
Overview 1 RT 1: 2-470 bp Neighborhood of RT #1 [2, 694] RVT-GII GIIM Feature: gene Location: 2-694 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8-176 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8-176 bp Feature: domain Description: GIIM Note: maturase Location: 251-470 bp Feature: domain Description: GIIM Note: maturase Location: 25 1-470 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: CAIZFN010000211.1 Escherichia coli strain Unknown:H6 / ND / 747 (ST Warwick) / F genome assembly, contig: NODE_211_length_255_cov_57.296875, whole genome shotgun sequence (255 bp)
Overview 1 RT 1: 1-250 bp Neighborhood of RT #1 [1, 252] RVT-GII Feature: gene Location: 1-252 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 109-250 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 109-250 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: CAIZFN010000272.1 Escherichia coli strain Unknown:H6 / ND / 747 (ST Warwick) / F genome assembly, contig: NODE_272_length_215_cov_17.965909, whole genome shotgun sequence (215 bp)
Overview 1 RT 1: 3-207 bp Neighborhood of RT #1 [3, 212] RVT-GII Feature: gene Location: 3-212 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 69-207 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 69-207 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: CAIZFN010000290.1 Escherichia coli strain Unknown:H6 / ND / 747 (ST Warwick) / F genome assembly, contig: NODE_290_length_195_cov_8.544118, whole genome shotgun sequence (195 bp)
Overview 1 RT 1: 3-177 bp Neighborhood of RT #1 [3, 194] RVT-GII Feature: gene Location: 3-194 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9-177 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9-177 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: CAIZFN010000316.1 Escherichia coli strain Unknown:H6 / ND / 747 (ST Warwick) / F genome assembly, contig: NODE_316_length_167_cov_9.150000, whole genome shotgun sequence (167 bp)
Overview 1 RT 1: 1-163 bp Neighborhood of RT #1 [1, 165] RVT-GII Feature: gene Location: 1-165 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22-163 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22-163 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: CAIZFN010000317.1 Escherichia coli strain Unknown:H6 / ND / 747 (ST Warwick) / F genome assembly, contig: NODE_317_length_167_cov_8.700000, whole genome shotgun sequence (167 bp)
Overview 1 RT 1: 1-163 bp Neighborhood of RT #1 [1, 165] RVT-GII Feature: gene Location: 1-165 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28-163 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28-163 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: CAIZFN010000318.1 Escherichia coli strain Unknown:H6 / ND / 747 (ST Warwick) / F genome assembly, contig: NODE_318_length_167_cov_7.075000, whole genome shotgun sequence (167 bp)
Overview 1 RT 1: 1-163 bp Neighborhood of RT #1 [1, 165] RVT-GII Feature: gene Location: 1-165 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28-163 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28-163 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII