myRT

myRT report for GCA_903970975.1_ASM90397097v1

Download annotations/find similar RTs

Seq: CAJCKX010000049.1 Serratia sp. ME43 genome assembly, contig: NODE_49_length_22591_cov_5.500846_pilon, whole genome shotgun sequence (22591 bp)
Overview 1 RT 1: 14248-20247 bp Neighborhood of RT #1 [14248, 20247] Phage_GPA RVT-Retrons COG3950 Feature: gene Location: 14248-14796 bp Feature: gene Location: 14892-17108 bp Feature: domain Description: Phage_GPA Location: 15390-16377 bp Feature: domain Description: Phage_GPA Location: 1 5390-1 6377 bp Feature: gene Location: 17281-18366 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 17524-18121 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 7524-1 81 21 bp Feature: gene Location: 18353-19987 bp Feature: domain Description: COG3950 Location: 18530-19877 bp Feature: domain Description: COG3950 Location: 1 8530-1 9877 bp Feature: gene Location: 20035-20247 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_GPA (pfam05840), RVT-Retrons, COG3950 (Predicted ATP-binding protein involved in virulence )

Seq: CAJCKX010000056.1 Serratia sp. ME43 genome assembly, contig: NODE_56_length_21389_cov_5.381067_pilon, whole genome shotgun sequence (21389 bp)
Overview 1 RT 1: 11457-15299 bp Neighborhood of RT #1 [11457, 15299] PiuB DUF2534 RVT-Retrons Feature: gene Location: 11457-13118 bp Feature: domain Description: PiuB Location: 11505-12819 bp Feature: domain Description: PiuB Location: 11505-12 819 bp Feature: domain Description: DUF2534 Location: 12879-13107 bp Feature: domain Description: DUF2 534 Location: 12 879-13107 bp Feature: gene Location: 13220-13567 bp Feature: gene Location: 13779-14738 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 13956-14481 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 13956-14481 bp Feature: gene Location: 14769-14996 bp Feature: gene Location: 15150-15299 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PiuB (COG3182), DUF2534 (pfam10749), RVT-Retrons

Seq: CAJCKX010000125.1 Serratia sp. ME43 genome assembly, contig: NODE_125_length_14370_cov_12.443735_pilon, whole genome shotgun sequence (14370 bp)
Overview 1 RT 1: 1396-10648 bp Neighborhood of RT #1 [1396, 10665] HTH_21 RVT-GII HTH_29 InsE PHA02517 PRK09870 RVT-GII RVT-GII PinE rve Feature: gene Location: 1396-1617 bp Feature: domain Description: HTH_21 Location: 1480-1588 bp Feature: domain Description: HTH_21 Location: 1480-1588 bp Feature: gene Location: 2049-2258 bp Feature: gene Location: 2398-3525 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2671-3382 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2671-3 3 82 bp Feature: gene Location: 3657-4898 bp Feature: domain Description: HTH_29 Location: 3663-3759 bp Feature: domain Description: HTH_29 Location: 3 663 -3 759 bp Feature: domain Description: InsE Location: 3942-4209 bp Feature: domain Description: InsE Location: 3 942-4209 bp Feature: domain Description: PHA02517 Location: 4329-4875 bp Feature: domain Description: PHA02517 Location: 43 29-4875 bp Feature: gene Location: 5168-5335 bp Feature: gene Location: 6481-7002 bp Feature: domain Description: PRK09870 Location: 6487-6985 bp Feature: domain Description: PRK09870 Location: 6487-6985 bp Feature: gene Location: 7584-7772 bp Feature: gene Location: 8001-8375 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8007-8232 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8007-823 2 bp Feature: gene Location: 8298-8507 bp Feature: gene Location: 8624-8992 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8816-8987 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8816-8987 bp Feature: gene Location: 9570-10169 bp Feature: domain Description: PinE Location: 9573-10125 bp Feature: domain Description: PinE Location: 9573 -10125 bp Feature: gene Location: 10285-10665 bp Feature: domain Description: rve Location: 10312-10648 bp Feature: domain Description: rve Location: 103 12-10648 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_21 (pfam13276), RVT-GII, HTH_29 (pfam13551), InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), PRK09870 (tyrosine recombinase; Provisional), PinE (COG1961), rve (pfam00665)