myRT

myRT report for GCA_903971065.1_ASM90397106v1

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Seq: CAJCKT010000004.1 Bacillus sp. ME5 genome assembly, contig: NODE_4_length_226464_cov_6.193877_pilon, whole genome shotgun sequence (226464 bp)
Overview 1 RT 1: 163187-169978 bp Neighborhood of RT #1 [163187, 170721] cxxc_20_cxxc Arm-DNA-bind_4 Phage_int_SAM_3 INT_ICEBs1_C_like RVT-UNC AlbA_2 Feature: gene Location: 163187-163411 bp Feature: domain Description: cxxc_20_cxxc Location: 163196-163337 bp Feature: domain Description: cxxc_20_cxxc Location: 1 631 96-1 63337 bp Feature: gene Location: 163772-164884 bp Feature: domain Description: Arm-DNA-bind_4 Location: 163811-163946 bp Feature: domain Description: Arm-DNA-bind_4 Location: 1 6381 1 -1 63946 bp Feature: domain Description: Phage_int_SAM_3 Location: 163976-164138 bp Feature: domain Description: Phage_int_SAM_3 Location: 1 63976-1 641 38 bp Feature: domain Description: INT_ICEBs1_C_like Location: 164300-164831 bp Feature: domain Description: INT_ICEBs1 _C_like Location: 1 64300-1 64831 bp Feature: gene Location: 165128-168538 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 165404-166013 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 1 65404-1 6601 3 bp Feature: gene Location: 168745-169323 bp Feature: gene Location: 169552-170721 bp Feature: domain Description: AlbA_2 Location: 169591-169978 bp Feature: domain Description: AlbA_2 Location: 1 69591 -1 69978 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT cxxc_20_cxxc (TIGR04104), Arm-DNA-bind_4 (pfam14657), Phage_int_SAM_3 (pfam14659), INT_ICEBs1_C_like (cd01189), RVT-UG25/RVT-UG19/RVT-CRISPR/RVT-GII(RVT-UNC), AlbA_2 (pfam04326)

Seq: CAJCKT010000015.1 Bacillus sp. ME5 genome assembly, contig: NODE_15_length_103489_cov_5.661981_pilon, whole genome shotgun sequence (103489 bp)
Overview 1 RT 1: 55241-66024 bp Neighborhood of RT #1 [55241, 66254] CcdC B_ant_repeat B_ant_repeat B_ant_repeat RVT-GII HNHc B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat Feature: gene Location: 55241-55747 bp Feature: domain Description: CcdC Location: 55250-55712 bp Feature: domain Description: CcdC Location: 552 50-55712 bp Feature: gene Location: 55811-57091 bp Feature: domain Description: B_ant_repeat Location: 55889-56000 bp Feature: domain Description: B_ant_repeat Location: 55889-56000 bp Feature: domain Description: B_ant_repeat Location: 56240-56396 bp Feature: domain Description: B_ant_repeat Location: 562 40-56396 bp Feature: domain Description: B_ant_repeat Location: 56639-56795 bp Feature: domain Description: B_ant_repeat Location: 56639-56795 bp Feature: gene Location: 57793-59721 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58114-58849 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58114-58849 bp Feature: domain Description: HNHc Note: nucleases Location: 59440-59605 bp Feature: domain Description: HNHc Note: nucleases Location: 59440-59605 bp Feature: gene Location: 59890-65463 bp Feature: domain Description: B_ant_repeat Location: 59896-60025 bp Feature: domain Description: B_ant_repeat Location: 59896-6002 5 bp Feature: domain Description: B_ant_repeat Location: 60265-60418 bp Feature: domain Description: B_ant_repeat Location: 602 65-60418 bp Feature: domain Description: B_ant_repeat Location: 60661-60817 bp Feature: domain Description: B_ant_repeat Location: 60661-60817 bp Feature: domain Description: B_ant_repeat Location: 61057-61213 bp Feature: domain Description: B_ant_repeat Location: 61057-612 13 bp Feature: domain Description: B_ant_repeat Location: 61453-61609 bp Feature: domain Description: B_ant_repeat Location: 61453-61609 bp Feature: domain Description: B_ant_repeat Location: 61849-62002 bp Feature: domain Description: B_ant_repeat Location: 61849-62 002 bp Feature: domain Description: B_ant_repeat Location: 62245-62401 bp Feature: domain Description: B_ant_repeat Location: 62 2 45-62 401 bp Feature: domain Description: B_ant_repeat Location: 62641-62797 bp Feature: domain Description: B_ant_repeat Location: 62 641-62 797 bp Feature: domain Description: B_ant_repeat Location: 63037-63193 bp Feature: domain Description: B_ant_repeat Location: 63037-63193 bp Feature: domain Description: B_ant_repeat Location: 63433-63586 bp Feature: domain Description: B_ant_repeat Location: 63433-63586 bp Feature: domain Description: B_ant_repeat Location: 63829-63985 bp Feature: domain Description: B_ant_repeat Location: 6382 9-63985 bp Feature: domain Description: B_ant_repeat Location: 64225-64381 bp Feature: domain Description: B_ant_repeat Location: 642 2 5-64381 bp Feature: domain Description: B_ant_repeat Location: 64621-64777 bp Feature: domain Description: B_ant_repeat Location: 6462 1-64777 bp Feature: domain Description: B_ant_repeat Location: 65017-65170 bp Feature: domain Description: B_ant_repeat Location: 65017-65170 bp Feature: gene Location: 65877-66254 bp Feature: domain Description: B_ant_repeat Location: 65886-66024 bp Feature: domain Description: B_ant_repeat Location: 65886-6602 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CcdC (COG4846), B_ant_repeat (TIGR01451), RVT-GII, HNHc (smart00507)

Seq: CAJCKT010000023.1 Bacillus sp. ME5 genome assembly, contig: NODE_23_length_86646_cov_7.670103_pilon, whole genome shotgun sequence (86646 bp)
Overview 1 RT 1: 28152-31897 bp 2 RT 2: 46385-52817 bp 3 RT 3: 60403-68979 bp Neighborhood of RT #1 [28152, 31914] RVT-GII HNHc E1_enzyme_family Neighborhood of RT #2 [46385, 52817] DUF3854 RVT-GII GIIM HNHc Neighborhood of RT #3 [60403, 69077] Replic_Relax RVT-GII Intron_maturas2 HNHc TraG-D_C xerC Feature: gene Location: 28152-28280 bp Feature: gene Location: 28342-28869 bp Feature: gene Location: 28933-30813 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29263-29992 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29263 -29992 bp Feature: domain Description: HNHc Note: nucleases Location: 30550-30700 bp Feature: domain Description: HNHc Note: nucleases Location: 3 0550-3 0700 bp Feature: gene Location: 31085-31219 bp Feature: gene Location: 31513-31914 bp Feature: domain Description: E1_enzyme_family Location: 31561-31897 bp Feature: domain Description: E1_enzyme_family Location: 3 1561-3 1897 bp Feature: gene Location: 46385-46615 bp Feature: gene Location: 47108-48379 bp Feature: domain Description: DUF3854 Location: 48026-48347 bp Feature: domain Description: DUF3 854 Location: 48026-483 47 bp Feature: gene Location: 48384-50279 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 48750-49449 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 48750-49449 bp Feature: domain Description: GIIM Note: maturase Location: 49533-49776 bp Feature: domain Description: GIIM Note: maturase Location: 4953 3 -49776 bp Feature: domain Description: HNHc Note: nucleases Location: 50022-50160 bp Feature: domain Description: HNHc Note: nucleases Location: 50022-50160 bp Feature: gene Location: 50948-51091 bp Feature: gene Location: 51267-52817 bp Feature: gene Location: 60403-61953 bp Feature: domain Description: Replic_Relax Location: 60499-61222 bp Feature: domain Description: Replic_Relax Location: 60499-61222 bp Feature: gene Location: 61925-63613 bp Feature: gene Location: 64227-66044 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64491-65322 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64491-653 22 bp Feature: domain Description: Intron_maturas2 Location: 65400-65694 bp Feature: domain Description: Intron_maturas2 Location: 65400-65694 bp Feature: domain Description: HNHc Note: nucleases Location: 65841-66018 bp Feature: domain Description: HNHc Note: nucleases Location: 65841-66018 bp Feature: gene Location: 66148-67545 bp Feature: domain Description: TraG-D_C Location: 66292-66655 bp Feature: domain Description: TraG-D_C Location: 66292-66655 bp Feature: gene Location: 68112-69077 bp Feature: domain Description: xerC Location: 68130-68979 bp Feature: domain Description: xerC Location: 6813 0-68979 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507), E1_enzyme_family (cl22428), DUF3854 (pfam12965), GIIM (pfam08388), Replic_Relax (pfam13814), Intron_maturas2 (pfam01348), TraG-D_C (pfam12696), xerC (PRK01287)

Seq: CAJCKT010000095.1 Bacillus sp. ME5 genome assembly, contig: NODE_95_length_2540_cov_34.542857_pilon, whole genome shotgun sequence (2540 bp)
Overview 1 RT 1: 152-2310 bp Neighborhood of RT #1 [152, 2426] RVT-GII HNHc Feature: gene Location: 152-310 bp Feature: gene Location: 594-2426 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 894-1599 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 894 -1599 bp Feature: domain Description: HNHc Note: nucleases Location: 2178-2310 bp Feature: domain Description: HNHc Note: nucleases Location: 2178-2310 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507)

Seq: CAJCKT010000098.1 Bacillus sp. ME5 genome assembly, contig: NODE_98_length_2369_cov_15.383244_pilon, whole genome shotgun sequence (2369 bp)
Overview 1 RT 1: 111-2008 bp Neighborhood of RT #1 [111, 2008] RVT_N RVT-GII GIIM Feature: gene Location: 111-1757 bp Feature: domain Description: RVT_N Location: 153-390 bp Feature: domain Description: RVT_N Location: 15 3-390 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 444-1104 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 444-1104 bp Feature: domain Description: GIIM Note: maturase Location: 1173-1404 bp Feature: domain Description: GIIM Note: maturase Location: 1173-1404 bp Feature: gene Location: 1805-2008 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)