myRT

myRT report for GCA_903992675.1_Q1134

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Seq: CAJEUT010000013.1 Mycobacterium tuberculosis variant bovis strain CSURQ1134 genome assembly, contig: contig00013, whole genome shotgun sequence (130703 bp)
Overview 1 RT 1: 21165-26212 bp Neighborhood of RT #1 [21165, 26232] LolD CAP_ED LolE SalY RVT-GII PRK13034 Feature: gene Location: 21165-22157 bp Feature: domain Description: LolD Location: 21180-21813 bp Feature: domain Description: LolD Location: 21 1 80-21 81 3 bp Feature: domain Description: CAP_ED Location: 21846-22104 bp Feature: domain Description: CAP_ED Location: 21 846-221 04 bp Feature: gene Location: 22160-23209 bp Feature: domain Description: LolE Location: 22166-22499 bp Feature: domain Description: LolE Location: 221 66-22499 bp Feature: domain Description: SalY Location: 22781-23198 bp Feature: domain Description: SalY Location: 22781 -231 98 bp Feature: gene Location: 23640-24365 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23871-24183 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23871 -241 83 bp Feature: gene Location: 24731-24880 bp Feature: gene Location: 24955-26232 bp Feature: domain Description: PRK13034 Location: 24967-26212 bp Feature: domain Description: PRK1 3034 Location: 24967-2621 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LolD (COG1136), CAP_ED (cl00047), LolE (COG4591), SalY (COG0577), RVT-GII, PRK13034 (serine hydroxymethyltransferase; Reviewed)

Seq: CAJEUT010000097.1 Mycobacterium tuberculosis variant bovis strain CSURQ1134 genome assembly, contig: contig00097, whole genome shotgun sequence (2882 bp)
Overview 1 RT 1: 2-2719 bp Neighborhood of RT #1 [2, 2719] L1-EN RVT-UNC Feature: gene Location: 2-2356 bp Feature: domain Description: L1-EN Location: 8-695 bp Feature: domain Description: L1-EN Location: 8-695 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 1520-2150 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 152 0-2 150 bp Feature: gene Location: 2402-2719 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT L1-EN (cd09076), RVT-UG27/RVT-CRISPR/RVT-GII(RVT-UNC)

Seq: CAJEUT010000098.1 Mycobacterium tuberculosis variant bovis strain CSURQ1134 genome assembly, contig: contig00098, whole genome shotgun sequence (2877 bp)
Overview 1 RT 1: 71-2841 bp Neighborhood of RT #1 [71, 2841] RVT-GII Feature: gene Location: 71-2626 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 383-1040 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 83 -1040 bp Feature: gene Location: 2692-2841 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: CAJEUT010000134.1 Mycobacterium tuberculosis variant bovis strain CSURQ1134 genome assembly, contig: contig00134, whole genome shotgun sequence (910 bp)
Overview 1 RT 1: 3-744 bp Neighborhood of RT #1 [3, 770] RVT-Retrons RVT_thumb Feature: gene Location: 3-770 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 285-546 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 285-54 6 bp Feature: domain Description: RVT_thumb Location: 609-744 bp Feature: domain Description: RVT_thumb Location: 609-74 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, RVT_thumb (pfam06817)

Seq: CAJEUT010000142.1 Mycobacterium tuberculosis variant bovis strain CSURQ1134 genome assembly, contig: contig00142, whole genome shotgun sequence (851 bp)
Overview 1 RT 1: 2-218 bp Neighborhood of RT #1 [2, 850] RVT-CRISPR-like Feature: gene Location: 2-850 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 65-218 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 65 -218 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR