myRT

myRT report for GCA_904381505.1_Chicken_18_mag_3

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Seq: CAJFJL010000014.1 (24054 bp)
Overview 1 RT 1: 3144-6473 bp Neighborhood of RT #1 [3144, 6473] RVT-Retrons Feature: gene Location: 3144-3533 bp Feature: gene Location: 4105-4323 bp Feature: gene Location: 4329-5594 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4611-5199 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 461 1 -51 99 bp Feature: gene Location: 5742-6017 bp Feature: gene Location: 6165-6473 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons

Seq: CAJFJL010000040.1 (13768 bp)
Overview 1 RT 1: 4632-8692 bp Neighborhood of RT #1 [4632, 9261] COG4286 MutS_I RVT-DGRs RVT-DGRs DUF378 LolA Feature: gene Location: 4632-5519 bp Feature: domain Description: COG4286 Location: 4668-5505 bp Feature: domain Description: COG42 86 Location: 4668-5505 bp Feature: gene Location: 5745-6071 bp Feature: domain Description: MutS_I Location: 5760-5889 bp Feature: domain Description: MutS_I Location: 5760-5889 bp Feature: gene Location: 6474-7160 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 6678-7158 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 6678-7158 bp Feature: gene Location: 7292-7615 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 7298-7535 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 72 98-7535 bp Feature: gene Location: 7718-7924 bp Feature: domain Description: DUF378 Location: 7727-7898 bp Feature: domain Description: DUF378 Location: 772 7-7898 bp Feature: gene Location: 8089-9261 bp Feature: domain Description: LolA Location: 8092-8692 bp Feature: domain Description: LolA Location: 8092 -8692 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4286 (Uncharacterized protein, UPF0160 family ), MutS_I (pfam01624), RVT-DGRs, DUF378 (pfam04070), LolA (pfam03548)

Seq: CAJFJL010000020.1 (22164 bp)
Overview 1 RT 1: 19873-22095 bp Neighborhood of RT #1 [19873, 22163] HTH_XRE HTH_XRE RVT-GII Feature: gene Location: 19873-21093 bp Feature: gene Location: 21276-21752 bp Feature: domain Description: HTH_XRE Location: 21297-21474 bp Feature: domain Description: HTH_XRE Location: 21297-21474 bp Feature: domain Description: HTH_XRE Location: 21546-21657 bp Feature: domain Description: HTH_XRE Location: 21546-21657 bp Feature: gene Location: 21834-22163 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22017-22095 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22017-22095 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-GII