myRT

myRT report for GCA_904384285.1_Chicken_20_mag_157

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Seq: CAJFJQ010000048.1 (7842 bp)
Overview 1 RT 1: 1002-5128 bp Neighborhood of RT #1 [1002, 5128] Thymidylat_synt Thymidylat_synt Peptidase_C70 RVT-DGRs Avd_like Feature: gene Location: 1002-1751 bp Feature: domain Description: Thymidylat_synt Location: 1023-1152 bp Feature: domain Description: Thymidylat_synt Location: 1 023-1 1 52 bp Feature: domain Description: Thymidylat_synt Location: 1272-1476 bp Feature: domain Description: Thymidylat_synt Location: 1 272-1 476 bp Feature: gene Location: 1780-3072 bp Feature: domain Description: Peptidase_C70 Location: 2635-2974 bp Feature: domain Description: Peptidase_C70 Location: 2635-2974 bp Feature: gene Location: 3093-4055 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3204-3807 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3204-3807 bp Feature: gene Location: 4142-4498 bp Feature: domain Description: Avd_like Location: 4169-4487 bp Feature: domain Description: Avd_like Location: 41 69-4487 bp Feature: gene Location: 4982-5128 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Thymidylat_synt (pfam00303), Peptidase_C70 (pfam12385), RVT-DGRs, Avd_like (cd16376)

Seq: CAJFJQ010000060.1 (3839 bp)
Overview 1 RT 1: 498-3589 bp Neighborhood of RT #1 [498, 3690] DDE_Tnp_1 RVT-DGRs Feature: gene Location: 498-1547 bp Feature: domain Description: DDE_Tnp_1 Location: 771-1032 bp Feature: domain Description: DDE_Tnp_1 Location: 771-1032 bp Feature: gene Location: 2099-2437 bp Feature: gene Location: 2740-3690 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2935-3589 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2 935-3589 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), RVT-DGRs

Seq: CAJFJQ010000046.1 (11640 bp)
Overview 1 RT 1: 107-3729 bp Neighborhood of RT #1 [107, 3749] RVT-GII COG1373 Feature: gene Location: 107-529 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 362-479 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 62-479 bp Feature: gene Location: 1314-3041 bp Feature: gene Location: 3354-3749 bp Feature: domain Description: COG1373 Location: 3366-3729 bp Feature: domain Description: COG13 73 Location: 3 3 66-3 729 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, COG1373 (Predicted ATPase, AAA+ superfamily )

Seq: CAJFJQ010000017.1 (24010 bp)
Overview 1 RT 1: 20173-23106 bp Neighborhood of RT #1 [20173, 23705] RimL SR_TndX_transposase Recombinase Zn_ribbon_recom RVT-AbiP2 Feature: gene Location: 20173-20796 bp Feature: domain Description: RimL Location: 20197-20692 bp Feature: domain Description: RimL Location: 20197-20692 bp Feature: gene Location: 20842-22083 bp Feature: domain Description: SR_TndX_transposase Location: 20872-21289 bp Feature: domain Description: SR_TndX_transposase Location: 20872-21289 bp Feature: domain Description: Recombinase Location: 21391-21748 bp Feature: domain Description: Recombinase Location: 21391-2174 8 bp Feature: domain Description: Zn_ribbon_recom Location: 21781-21943 bp Feature: domain Description: Zn_ribbon_recom Location: 21781-2194 3 bp Feature: gene Location: 22173-23705 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 22647-23106 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 2264 7-23106 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RimL (COG1670), SR_TndX_transposase (cd03770), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), RVT-AbiP2

Seq: CAJFJQ010000067.1 (2439 bp)
Overview 1 RT 1: 172-2436 bp Neighborhood of RT #1 [172, 2436] RVT-GII GIIM Feature: gene Location: 172-966 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 178-607 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 178-607 bp Feature: domain Description: GIIM Note: maturase Location: 700-895 bp Feature: domain Description: GIIM Note: maturase Location: 700-895 bp Feature: gene Location: 1075-2436 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)