myRT

myRT report for GCA_904809645.1_25964_1_119

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Seq: CAJGEO010000022.1 Escherichia coli strain GU733 genome assembly, contig: ERS2428242SCcontig000022, whole genome shotgun sequence (57936 bp)
Overview 1 RT 1: 714-3320 bp 2 RT 2: 53099-57913 bp Neighborhood of RT #1 [714, 3325] group_II_RT_mat RVT-GII PinE Neighborhood of RT #2 [53099, 57924] PHA02517 COG3547 RVT-GII GIIM PHA02517 Tra8 Feature: gene Location: 714-1106 bp Ori: CAD5559840.1 Feature: domain Description: group_II_RT_mat Note: maturase Location: 870-1053 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 870-1 053 bp Feature: gene Location: 1106-1693 bp Ori: CAD5559854.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1112-1652 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 1 2-1 652 bp Feature: gene Location: 2267-2668 bp Feature: gene Location: 2768-3325 bp Ori: CAD5559884.1 Gene: tnpR_1 Feature: domain Description: PinE Location: 2771-3320 bp Feature: domain Description: PinE Location: 2771 -3320 bp Feature: gene Location: 53099-53305 bp Ori: CAD5560689.1 Feature: domain Description: PHA02517 Location: 53102-53294 bp Feature: domain Description: PHA0251 7 Location: 531 02-53294 bp Feature: gene Location: 53424-54500 bp Ori: CAD5560700.1 Feature: domain Description: COG3547 Location: 53463-54384 bp Feature: domain Description: COG3547 Location: 53463-54384 bp Feature: gene Location: 55042-56565 bp Ori: CAD5560714.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 55315-56047 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5531 5-56047 bp Feature: domain Description: GIIM Note: maturase Location: 56122-56320 bp Feature: domain Description: GIIM Note: maturase Location: 561 22-56320 bp Feature: gene Location: 57157-57396 bp Ori: CAD5560728.1 Feature: domain Description: PHA02517 Location: 57160-57331 bp Feature: domain Description: PHA0251 7 Location: 571 60-57331 bp Feature: gene Location: 57658-57924 bp Ori: CAD5560742.1 Feature: domain Description: Tra8 Location: 57661-57913 bp Feature: domain Description: Tra8 Location: 57661 -5791 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT group_II_RT_mat (TIGR04416), RVT-GII, PinE (COG1961), PHA02517 (putative transposase OrfB; Reviewed), COG3547 (Transposase ), GIIM (pfam08388), Tra8 (COG2826)