CRISPRone

CRISPRone report for SRR9686289

♦ Seq 1: NODE_3_length_477652_cov_11.003172

⇒Summary: seq-len = 477652 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 312712-316325 bp Zoom in on locus 1 Gene: pfam13280:WYL Type: other Location: 312712-313611 bp Gene: unk Type: unknown Location: 313608-314873 bp Gene: unk Type: unknown Location: 314881-315654 bp Gene: cd09692:cas5 Type: Subtype-I-B Location: 315657-316325 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NODE_1_length_542501_cov_10.397872

⇒Summary: seq-len = 542501 bp; # of CRISPR array = 1; # of cas gene = 9  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 31731-46171 bp Zoom in on locus 1 x12 CRISPR array Location: 31731-32543 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 31731-32543 bp Num of repeats: 12 Spacers: s1-s11 Gene: cd09634:cas1 Type: universal Location: 33275-35545 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 35565-36515 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 36512-36922 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 36935-37774 bp Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 37794-38933 bp Gene: pfam12469:cas10 Type: Subtype-III-B Location: 38926-40728 bp Gene: mkCas0086:cmr1gr7 Type: Subtype-III-B Location: 40733-42142 bp Gene: unk Type: unknown Location: 42156-42635 bp Gene: cash17:cash17 Type: Type- Location: 42632-44059 bp Gene: unk Type: unknown Location: 44104-44883 bp Gene: unk Type: unknown Location: 44859-45485 bp Gene: cls000004:cas6 Type: other Location: 45503-46171 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 31731-32543 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NODE_6_length_173788_cov_10.159348

⇒Summary: seq-len = 173788 bp; # of CRISPR array = 0; # of cas gene = 3  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 43296-53403 bp Zoom in on locus 1 Gene: cd09710:cas3 Type: Subtype-I-D Location: 43296-48239 bp Gene: unk Type: unknown Location: 48341-49414 bp Gene: pfam13280:WYL Type: other Location: 49453-50463 bp Gene: unk Type: unknown Location: 51229-51405 bp Gene: mkCas0123:csx19 Type: Subtype-III-D Location: 51742-53403 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)