CRISPRone

CRISPRone report for SRR9686304

♦ Seq 1: NODE_8_length_161462_cov_7.661180

⇒Summary: seq-len = 161462 bp; # of CRISPR array = 0; # of cas gene = 9  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 787-13683 bp Zoom in on locus 1 Gene: cd09634:cas1 Type: universal Location: 787-3057 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 3077-4027 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 4024-4434 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 4447-5286 bp Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 5306-6445 bp Gene: pfam12469:cas10 Type: Subtype-III-B Location: 6438-8240 bp Gene: mkCas0086:cmr1gr7 Type: Subtype-III-B Location: 8245-9654 bp Gene: unk Type: unknown Location: 9668-10147 bp Gene: cash17:cash17 Type: Type- Location: 10144-11571 bp Gene: unk Type: unknown Location: 11616-12395 bp Gene: unk Type: unknown Location: 12371-12997 bp Gene: cls000004:cas6 Type: other Location: 13015-13683 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NODE_2_length_362830_cov_8.011495

⇒Summary: seq-len = 362830 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 46506-50119 bp Zoom in on locus 1 Gene: cd09692:cas5 Type: Subtype-I-B Location: 46506-47174 bp Gene: unk Type: unknown Location: 47177-47950 bp Gene: unk Type: unknown Location: 47958-49223 bp Gene: pfam13280:WYL Type: other Location: 49220-50119 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NODE_10_length_147557_cov_7.894279

⇒Summary: seq-len = 147557 bp; # of CRISPR array = 0; # of cas gene = 3  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 120386-130493 bp Zoom in on locus 1 Gene: mkCas0123:csx19 Type: Subtype-III-D Location: 120386-122047 bp Gene: unk Type: unknown Location: 122082-122243 bp Gene: unk Type: unknown Location: 122384-122560 bp Gene: pfam13280:WYL Type: other Location: 123326-124336 bp Gene: unk Type: unknown Location: 124375-125448 bp Gene: cd09710:cas3 Type: Subtype-I-D Location: 125550-130493 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: NODE_46_length_32454_cov_7.839594

⇒Summary: seq-len = 32454 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 13-826 bp Zoom in on locus 1 x12 CRISPR array Location: 13-826 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 13-826 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 13-826 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)