CRISPRone

CRISPRone report for SRR9686307

♦ Seq 1: NODE_2_length_439438_cov_12.322011

⇒Summary: seq-len = 439438 bp; # of CRISPR array = 1; # of cas gene = 10  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 393306-407810 bp Zoom in on locus 1 x12 Gene: cls000004:cas6 Type: other Location: 393306-394037 bp Gene: unk Type: unknown Location: 394055-394681 bp Gene: unk Type: unknown Location: 394657-395436 bp Gene: cash17:cash17 Type: Type- Location: 395481-396908 bp Gene: unk Type: unknown Location: 396905-397384 bp Gene: mkCas0086:cmr1gr7 Type: Subtype-III-B Location: 397398-398807 bp Gene: pfam12469:cas10 Type: Subtype-III-B Location: 398812-400614 bp Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 400607-401746 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 401766-402605 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 402618-403028 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 403025-403975 bp Gene: cd09634:cas1 Type: universal Location: 403995-406265 bp Gene: cd09725:cas2 Type: universal Location: 406259-406549 bp CRISPR array Location: 406997-407810 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 406997-407810 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 406997-407810 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NODE_1_length_476998_cov_12.972401

⇒Summary: seq-len = 476998 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 160674-164287 bp Zoom in on locus 1 Gene: cd09692:cas5 Type: Subtype-I-B Location: 160674-161342 bp Gene: unk Type: unknown Location: 161345-162118 bp Gene: unk Type: unknown Location: 162126-163391 bp Gene: pfam13280:WYL Type: other Location: 163388-164287 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NODE_11_length_140434_cov_12.300066

⇒Summary: seq-len = 140434 bp; # of CRISPR array = 0; # of cas gene = 3  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 87399-97506 bp Zoom in on locus 1 Gene: mkCas0123:csx19 Type: Subtype-III-D Location: 87399-89060 bp Gene: unk Type: unknown Location: 89095-89256 bp Gene: unk Type: unknown Location: 89397-89573 bp Gene: pfam13280:WYL Type: other Location: 90339-91349 bp Gene: unk Type: unknown Location: 91388-92461 bp Gene: cd09710:cas3 Type: Subtype-I-D Location: 92563-97506 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)