CRISPRone

CRISPRone report for SRR9713234

♦ Seq 1: NODE_4_length_133172_cov_5.294718

⇒Summary: seq-len = 133172 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-956 bp Zoom in on locus 1 x14 CRISPR array Location: 1-956 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 1-956 bp Num of repeats: 14 Spacers: s1-s13 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1-956 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NODE_72_length_24746_cov_5.165607

⇒Summary: seq-len = 24746 bp; # of CRISPR array = 0; # of cas gene = 9  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 783-13679 bp Zoom in on locus 1 Gene: cd09634:cas1 Type: universal Location: 783-3053 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 3073-4023 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 4020-4430 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 4443-5282 bp Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 5302-6441 bp Gene: pfam12469:cas10 Type: Subtype-III-B Location: 6434-8236 bp Gene: mkCas0086:cmr1gr7 Type: Subtype-III-B Location: 8241-9650 bp Gene: unk Type: unknown Location: 9664-10143 bp Gene: cash17:cash17 Type: Type- Location: 10140-11567 bp Gene: unk Type: unknown Location: 11612-12391 bp Gene: unk Type: unknown Location: 12367-12993 bp Gene: cls000004:cas6 Type: other Location: 13011-13679 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NODE_18_length_81546_cov_5.370213

⇒Summary: seq-len = 81546 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 37863-41476 bp Zoom in on locus 1 Gene: pfam13280:WYL Type: other Location: 37863-38762 bp Gene: unk Type: unknown Location: 38759-40024 bp Gene: unk Type: unknown Location: 40032-40805 bp Gene: cd09692:cas5 Type: Subtype-I-B Location: 40808-41476 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)