CRISPRone

CRISPRone report for SRR9713256

♦ Seq 1: NODE_54_length_32098_cov_20.743251

⇒Summary: seq-len = 32098 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 6-467 bp Zoom in on locus 1 x7 CRISPR array Location: 6-467 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 6-467 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 6-467 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NODE_14_length_108948_cov_20.238500

⇒Summary: seq-len = 108948 bp; # of CRISPR array = 1; # of cas gene = 9  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 15-14171 bp Zoom in on locus 1 x8 CRISPR array Location: 15-543 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 15-543 bp Num of repeats: 8 Spacers: s1-s7 Gene: cd09634:cas1 Type: universal Location: 1275-3545 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 3565-4515 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 4512-4922 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 4935-5774 bp Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 5794-6933 bp Gene: pfam12469:cas10 Type: Subtype-III-B Location: 6926-8728 bp Gene: mkCas0086:cmr1gr7 Type: Subtype-III-B Location: 8733-10142 bp Gene: unk Type: unknown Location: 10156-10635 bp Gene: cash17:cash17 Type: Type- Location: 10632-12059 bp Gene: unk Type: unknown Location: 12104-12883 bp Gene: unk Type: unknown Location: 12859-13485 bp Gene: cls000004:cas6 Type: other Location: 13503-14171 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 15-543 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NODE_8_length_157554_cov_23.538054

⇒Summary: seq-len = 157554 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 143864-147477 bp Zoom in on locus 1 Gene: cd09692:cas5 Type: Subtype-I-B Location: 143864-144532 bp Gene: unk Type: unknown Location: 144535-145308 bp Gene: unk Type: unknown Location: 145316-146581 bp Gene: pfam13280:WYL Type: other Location: 146578-147477 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)