CRISPRone

CRISPRone report for SRR9713260

♦ Seq 1: NODE_55_length_25059_cov_4.653016

⇒Summary: seq-len = 25059 bp; # of CRISPR array = 0; # of cas gene = 9  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-11511 bp Zoom in on locus 1 Gene: pfam00078:RT Type: other Location: 1-885 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 905-1855 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 1852-2262 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 2275-3114 bp Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 3134-4273 bp Gene: pfam12469:cas10 Type: Subtype-III-B Location: 4266-6068 bp Gene: mkCas0086:cmr1gr7 Type: Subtype-III-B Location: 6073-7482 bp Gene: unk Type: unknown Location: 7496-7975 bp Gene: cash17:cash17 Type: Type- Location: 7972-9399 bp Gene: unk Type: unknown Location: 9444-10223 bp Gene: unk Type: unknown Location: 10199-10825 bp Gene: cls000004:cas6 Type: other Location: 10843-11511 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NODE_14_length_52935_cov_4.555768

⇒Summary: seq-len = 52935 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 10630-14243 bp Zoom in on locus 1 Gene: cd09692:cas5 Type: Subtype-I-B Location: 10630-11298 bp Gene: unk Type: unknown Location: 11301-12074 bp Gene: unk Type: unknown Location: 12082-13347 bp Gene: pfam13280:WYL Type: other Location: 13344-14243 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NODE_165_length_9524_cov_4.672405

⇒Summary: seq-len = 9524 bp; # of CRISPR array = 1; # of cas gene = 1  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 6448-9522 bp Zoom in on locus 1 x14 CRISPR array Location: 6448-7402 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 6448-7402 bp Num of repeats: 14 Spacers: s1-s13 Gene: cd09634:cas1 Type: universal Location: 8134-9522 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 6448-7402 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)