CRISPRone

CRISPRone report for SRR9713266

♦ Seq 1: NODE_1_length_385010_cov_9.218153

⇒Summary: seq-len = 385010 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 89833-93443 bp Zoom in on locus 1 Gene: pfam13280:WYL Type: other Location: 89833-90732 bp Gene: unk Type: unknown Location: 90729-91994 bp Gene: unk Type: unknown Location: 92002-92772 bp Gene: cd09692:cas5 Type: Subtype-I-B Location: 92775-93443 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NODE_9_length_205618_cov_8.042600

⇒Summary: seq-len = 205618 bp; # of CRISPR array = 0; # of cas gene = 3  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 125645-135774 bp Zoom in on locus 1 Gene: mkCas0123:csx19 Type: Subtype-III-D Location: 125645-127306 bp Gene: unk Type: unknown Location: 127341-127502 bp Gene: unk Type: unknown Location: 127643-127819 bp Gene: pfam13280:WYL Type: other Location: 128585-129595 bp Gene: cd09710:cas3 Type: Subtype-I-D Location: 129634-135774 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NODE_31_length_51258_cov_8.098705

⇒Summary: seq-len = 51258 bp; # of CRISPR array = 1; # of cas gene = 4  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 29262-31646 bp Zoom in on locus 1 x10 Gene: cd09652:cas6 Type: other Location: 29262-29933 bp Gene: mkCas0069:cas5 Type: Subtype-I-B Location: 29945-30325 bp Gene: cd09722:cas1 Type: universal Location: 30318-30557 bp Gene: cd09725:cas2 Type: universal Location: 30560-30823 bp CRISPR array Location: 31036-31646 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 31036-31646 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 31036-31646 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: NODE_87_length_14173_cov_3.216390

⇒Summary: seq-len = 14173 bp; # of CRISPR array = 1; # of cas gene = 3  (type II) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 20-6655 bp Zoom in on locus 1 x9 CRISPR array Location: 20-679 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 20-679 bp Num of repeats: 9 Spacers: s1-s8 antiRepeat Location: 785-831 bp Strand: - Match length: 42 bp Mismatch: 5 bp Gene: pfam09827:cas2 Type: Subtype-II-C Location: 930-1262 bp Gene: cd09634:cas1 Type: Subtype-II-C Location: 1262-2191 bp Gene: cd09643:cas9 Type: Subtype-II-C Location: 2252-6550 bp antiRepeat Location: 6610-6655 bp Strand: - Match length: 29 bp Mismatch: 18 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 20-679 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: NODE_26_length_65333_cov_9.728484

⇒Summary: seq-len = 65333 bp; # of CRISPR array = 1; # of cas gene = 3  (type II) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 56834-64945 bp Zoom in on locus 1 x17 antiRepeat Location: 56834-56879 bp Strand: + Match length: 26 bp Mismatch: 21 bp Gene: cd09643:cas9 Type: Subtype-II-C Location: 56947-61257 bp Gene: unk Type: unknown Location: 61273-61797 bp Gene: unk Type: unknown Location: 61864-62172 bp Gene: cd09720:cas1 Type: Subtype-II-C Location: 62292-63224 bp Gene: pfam09827:cas2 Type: Subtype-II-C Location: 63228-63560 bp CRISPR array Location: 63669-64945 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 63669-64945 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 63669-64945 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)