CRISPRone

CRISPRone report for SRR9713270

♦ Seq 1: NODE_7_length_275498_cov_14.675163

⇒Summary: seq-len = 275498 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 89839-93449 bp Zoom in on locus 1 Gene: pfam13280:WYL Type: other Location: 89839-90738 bp Gene: unk Type: unknown Location: 90735-92000 bp Gene: unk Type: unknown Location: 92008-92778 bp Gene: cd09692:cas5 Type: Subtype-I-B Location: 92781-93449 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NODE_27_length_51258_cov_12.821026

⇒Summary: seq-len = 51258 bp; # of CRISPR array = 1; # of cas gene = 4  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 29262-31646 bp Zoom in on locus 1 x10 Gene: cd09652:cas6 Type: other Location: 29262-29933 bp Gene: mkCas0069:cas5 Type: Subtype-I-B Location: 29945-30325 bp Gene: cd09722:cas1 Type: universal Location: 30318-30557 bp Gene: cd09725:cas2 Type: universal Location: 30560-30823 bp CRISPR array Location: 31036-31646 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 31036-31646 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 31036-31646 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NODE_3_length_411955_cov_13.229769

⇒Summary: seq-len = 411955 bp; # of CRISPR array = 0; # of cas gene = 3  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 125645-135774 bp Zoom in on locus 1 Gene: mkCas0123:csx19 Type: Subtype-III-D Location: 125645-127306 bp Gene: unk Type: unknown Location: 127341-127502 bp Gene: unk Type: unknown Location: 127643-127819 bp Gene: pfam13280:WYL Type: other Location: 128585-129595 bp Gene: cd09710:cas3 Type: Subtype-I-D Location: 129634-135774 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: NODE_10_length_167749_cov_18.149487

⇒Summary: seq-len = 167749 bp; # of CRISPR array = 1; # of cas gene = 3  (type II) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 159363-167361 bp Zoom in on locus 1 x17 Gene: cd09643:cas9 Type: Subtype-II-C Location: 159363-163673 bp Gene: unk Type: unknown Location: 163689-164213 bp Gene: unk Type: unknown Location: 164280-164588 bp Gene: cd09720:cas1 Type: Subtype-II-C Location: 164708-165640 bp Gene: pfam09827:cas2 Type: Subtype-II-C Location: 165644-165976 bp CRISPR array Location: 166085-167361 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 166085-167361 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 166085-167361 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)