CRISPRone

CRISPRone report for SRR9713273

♦ Seq 1: NODE_11_length_167644_cov_7.895882

⇒Summary: seq-len = 167644 bp; # of CRISPR array = 1; # of cas gene = 3  (type II) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 285-8395 bp Zoom in on locus 1 x17 CRISPR array Location: 285-1560 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 285-1560 bp Num of repeats: 17 Spacers: s1-s16 Gene: pfam09827:cas2 Type: Subtype-II-C Location: 1669-2001 bp Gene: cd09720:cas1 Type: Subtype-II-C Location: 2005-2937 bp Gene: unk Type: unknown Location: 3057-3365 bp Gene: unk Type: unknown Location: 3432-3956 bp Gene: cd09643:cas9 Type: Subtype-II-C Location: 3972-8282 bp antiRepeat Location: 8350-8395 bp Strand: - Match length: 26 bp Mismatch: 21 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 285-1560 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NODE_3_length_205607_cov_5.759657

⇒Summary: seq-len = 205607 bp; # of CRISPR array = 0; # of cas gene = 3  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 125645-135774 bp Zoom in on locus 1 Gene: mkCas0123:csx19 Type: Subtype-III-D Location: 125645-127306 bp Gene: unk Type: unknown Location: 127341-127502 bp Gene: unk Type: unknown Location: 127643-127819 bp Gene: pfam13280:WYL Type: other Location: 128585-129595 bp Gene: cd09710:cas3 Type: Subtype-I-D Location: 129634-135774 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NODE_30_length_62193_cov_5.881699

⇒Summary: seq-len = 62193 bp; # of CRISPR array = 1; # of cas gene = 4  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 33260-35644 bp Zoom in on locus 1 x10 Gene: cd09652:cas6 Type: other Location: 33260-33931 bp Gene: mkCas0069:cas5 Type: Subtype-I-B Location: 33943-34323 bp Gene: cd09722:cas1 Type: universal Location: 34316-34555 bp Gene: cd09725:cas2 Type: universal Location: 34558-34821 bp CRISPR array Location: 35034-35644 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 35034-35644 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 35034-35644 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: NODE_2_length_275249_cov_6.570561

⇒Summary: seq-len = 275249 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 89817-93427 bp Zoom in on locus 1 Gene: pfam13280:WYL Type: other Location: 89817-90716 bp Gene: unk Type: unknown Location: 90713-91978 bp Gene: unk Type: unknown Location: 91986-92756 bp Gene: cd09692:cas5 Type: Subtype-I-B Location: 92759-93427 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)