CRISPRone

CRISPRone report for SRR9713275

♦ Seq 1: NODE_133_length_12783_cov_5.009192

⇒Summary: seq-len = 12783 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1733-5346 bp Zoom in on locus 1 Gene: cd09692:cas5 Type: Subtype-I-B Location: 1733-2401 bp Gene: unk Type: unknown Location: 2404-3177 bp Gene: unk Type: unknown Location: 3185-4450 bp Gene: pfam13280:WYL Type: other Location: 4447-5346 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NODE_120_length_14090_cov_4.421874

⇒Summary: seq-len = 14090 bp; # of CRISPR array = 0; # of cas gene = 9  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 705-13601 bp Zoom in on locus 1 Gene: cd09634:cas1 Type: universal Location: 705-2975 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 2995-3939 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 3942-4352 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 4365-5204 bp Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 5224-6363 bp Gene: pfam12469:cas10 Type: Subtype-III-B Location: 6356-8158 bp Gene: mkCas0086:cmr1gr7 Type: Subtype-III-B Location: 8163-9572 bp Gene: unk Type: unknown Location: 9586-10065 bp Gene: cash17:cash17 Type: Type- Location: 10062-11489 bp Gene: unk Type: unknown Location: 11534-12313 bp Gene: unk Type: unknown Location: 12289-12915 bp Gene: cls000004:cas6 Type: other Location: 12933-13601 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NODE_108_length_15369_cov_4.635301

⇒Summary: seq-len = 15369 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 14376-15330 bp Zoom in on locus 1 x14 CRISPR array Location: 14376-15330 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 14376-15330 bp Num of repeats: 14 Spacers: s1-s13 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 14376-15330 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)