CRISPRone

CRISPRone report for SRR9713283

♦ Seq 1: NODE_15_length_113968_cov_35.487109

⇒Summary: seq-len = 113968 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 75996-79609 bp Zoom in on locus 1 Gene: cd09692:cas5 Type: Subtype-I-B Location: 75996-76664 bp Gene: unk Type: unknown Location: 76667-77440 bp Gene: unk Type: unknown Location: 77448-78713 bp Gene: pfam13280:WYL Type: other Location: 78710-79609 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NODE_56_length_32870_cov_24.926253

⇒Summary: seq-len = 32870 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 284-1239 bp Zoom in on locus 1 x14 CRISPR array Location: 284-1239 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 284-1239 bp Num of repeats: 14 Spacers: s1-s13 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 284-1239 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NODE_66_length_12979_cov_9.412334

⇒Summary: seq-len = 12979 bp; # of CRISPR array = 0; # of cas gene = 9  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 469-12978 bp Zoom in on locus 1 Gene: cd09634:cas1 Type: universal Location: 469-2739 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 2759-3703 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 3706-4116 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 4129-4968 bp Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 4988-6127 bp Gene: pfam12469:cas10 Type: Subtype-III-B Location: 6120-7922 bp Gene: mkCas0086:cmr1gr7 Type: Subtype-III-B Location: 7927-9336 bp Gene: unk Type: unknown Location: 9350-9829 bp Gene: cash17:cash17 Type: Type- Location: 9826-11253 bp Gene: unk Type: unknown Location: 11298-12077 bp Gene: unk Type: unknown Location: 12053-12679 bp Gene: cls000004:cas6 Type: other Location: 12697-12978 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)