CRISPRone

CRISPRone report for SRR9713286

♦ Seq 1: NODE_33_length_32189_cov_41.515498

⇒Summary: seq-len = 32189 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 31644-32172 bp Zoom in on locus 1 x8 CRISPR array Location: 31644-32172 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 31644-32172 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 31644-32172 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NODE_21_length_81272_cov_34.996355

⇒Summary: seq-len = 81272 bp; # of CRISPR array = 1; # of cas gene = 10  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 21-14378 bp Zoom in on locus 1 x11 CRISPR array Location: 21-750 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 21-750 bp Num of repeats: 11 Spacers: s1-s10 Gene: cd09725:cas2 Type: universal Location: 1198-1488 bp Gene: cd09634:cas1 Type: universal Location: 1482-3752 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 3772-4722 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 4719-5129 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 5142-5981 bp Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 6001-7140 bp Gene: pfam12469:cas10 Type: Subtype-III-B Location: 7133-8935 bp Gene: mkCas0086:cmr1gr7 Type: Subtype-III-B Location: 8940-10349 bp Gene: unk Type: unknown Location: 10363-10842 bp Gene: cash17:cash17 Type: Type- Location: 10839-12266 bp Gene: unk Type: unknown Location: 12311-13090 bp Gene: unk Type: unknown Location: 13066-13692 bp Gene: cls000004:cas6 Type: other Location: 13710-14378 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 21-750 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NODE_3_length_444842_cov_43.575181

⇒Summary: seq-len = 444842 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 342107-345720 bp Zoom in on locus 1 Gene: pfam13280:WYL Type: other Location: 342107-343006 bp Gene: unk Type: unknown Location: 343003-344268 bp Gene: unk Type: unknown Location: 344276-345049 bp Gene: cd09692:cas5 Type: Subtype-I-B Location: 345052-345720 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)