CRISPRone

CRISPRone report for SRR9713294

♦ Seq 1: NODE_29_length_60206_cov_4.269655

⇒Summary: seq-len = 60206 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 46516-50129 bp Zoom in on locus 1 Gene: cd09692:cas5 Type: Subtype-I-B Location: 46516-47184 bp Gene: unk Type: unknown Location: 47187-47960 bp Gene: unk Type: unknown Location: 47968-49233 bp Gene: pfam13280:WYL Type: other Location: 49230-50129 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NODE_18_length_74464_cov_5.516940

⇒Summary: seq-len = 74464 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18-683 bp Zoom in on locus 1 x10 CRISPR array Location: 18-683 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 18-683 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 18-683 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NODE_66_length_24437_cov_5.488147

⇒Summary: seq-len = 24437 bp; # of CRISPR array = 1; # of cas gene = 9  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-14222 bp Zoom in on locus 1 x9 CRISPR array Location: 1-594 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 1-594 bp Num of repeats: 9 Spacers: s1-s8 Gene: cd09634:cas1 Type: universal Location: 1326-3596 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 3616-4560 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 4563-4973 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 4986-5825 bp Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 5845-6984 bp Gene: pfam12469:cas10 Type: Subtype-III-B Location: 6977-8779 bp Gene: mkCas0086:cmr1gr7 Type: Subtype-III-B Location: 8784-10193 bp Gene: unk Type: unknown Location: 10207-10686 bp Gene: cash17:cash17 Type: Type- Location: 10683-12110 bp Gene: unk Type: unknown Location: 12155-12934 bp Gene: unk Type: unknown Location: 12910-13536 bp Gene: cls000004:cas6 Type: other Location: 13554-14222 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1-594 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)