CRISPRone

CRISPRone report for SRR9713302

♦ Seq 1: NODE_67_length_1508_cov_4.728149

⇒Summary: seq-len = 1508 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 390-1511 bp Zoom in on locus 1 x15 CRISPR array Location: 390-1511 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 390-1511 bp Num of repeats: 15 Spacers: s1-s14 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 390-1511 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NODE_3_length_280801_cov_7.086167

⇒Summary: seq-len = 280801 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 125531-129141 bp Zoom in on locus 1 Gene: pfam13280:WYL Type: other Location: 125531-126430 bp Gene: unk Type: unknown Location: 126427-127692 bp Gene: unk Type: unknown Location: 127700-128470 bp Gene: cd09692:cas5 Type: Subtype-I-B Location: 128473-129141 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NODE_24_length_63983_cov_6.871277

⇒Summary: seq-len = 63983 bp; # of CRISPR array = 0; # of cas gene = 3  (type II) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 164-6777 bp Zoom in on locus 1 Gene: pfam09827:cas2 Type: Subtype-II-C Location: 164-496 bp Gene: cd09720:cas1 Type: Subtype-II-C Location: 500-1432 bp Gene: unk Type: unknown Location: 1552-1860 bp Gene: unk Type: unknown Location: 1927-2451 bp Gene: cd09643:cas9 Type: Subtype-II-C Location: 2467-6777 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: NODE_12_length_137880_cov_5.859438

⇒Summary: seq-len = 137880 bp; # of CRISPR array = 1; # of cas gene = 4  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 106238-108621 bp Zoom in on locus 1 x10 CRISPR array Location: 106238-106847 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 106238-106847 bp Num of repeats: 10 Spacers: s1-s9 Gene: cd09725:cas2 Type: universal Location: 107060-107323 bp Gene: cd09722:cas1 Type: universal Location: 107326-107565 bp Gene: mkCas0069:cas5 Type: Subtype-I-B Location: 107558-107938 bp Gene: cd09652:cas6 Type: other Location: 107950-108621 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 106238-106847 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: NODE_5_length_224235_cov_6.072138

⇒Summary: seq-len = 224235 bp; # of CRISPR array = 0; # of cas gene = 3  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 125645-135774 bp Zoom in on locus 1 Gene: mkCas0123:csx19 Type: Subtype-III-D Location: 125645-127306 bp Gene: unk Type: unknown Location: 127341-127502 bp Gene: unk Type: unknown Location: 127643-127819 bp Gene: pfam13280:WYL Type: other Location: 128585-129595 bp Gene: cd09710:cas3 Type: Subtype-I-D Location: 129634-135774 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)