CRISPRone

CRISPRone report for SRR9713329

♦ Seq 1: NODE_122_length_1016_cov_4.004162

⇒Summary: seq-len = 1016 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3-662 bp Zoom in on locus 1 x9 CRISPR array Location: 3-662 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 3-662 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3-662 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NODE_4_length_176411_cov_4.550863

⇒Summary: seq-len = 176411 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 122475-126088 bp Zoom in on locus 1 Gene: pfam13280:WYL Type: other Location: 122475-123374 bp Gene: unk Type: unknown Location: 123371-124636 bp Gene: unk Type: unknown Location: 124644-125417 bp Gene: cd09692:cas5 Type: Subtype-I-B Location: 125420-126088 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NODE_117_length_1437_cov_5.952967

⇒Summary: seq-len = 1437 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 7-1432 bp Zoom in on locus 1 x19 CRISPR array Location: 7-1432 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 7-1432 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 7-1432 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: NODE_29_length_65162_cov_4.329918

⇒Summary: seq-len = 65162 bp; # of CRISPR array = 0; # of cas gene = 9  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 51429-64388 bp Zoom in on locus 1 Gene: cls000004:cas6 Type: other Location: 51429-52160 bp Gene: unk Type: unknown Location: 52178-52804 bp Gene: unk Type: unknown Location: 52780-53559 bp Gene: cash17:cash17 Type: Type- Location: 53604-55031 bp Gene: unk Type: unknown Location: 55028-55507 bp Gene: mkCas0086:cmr1gr7 Type: Subtype-III-B Location: 55521-56930 bp Gene: pfam12469:cas10 Type: Subtype-III-B Location: 56935-58737 bp Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 58730-59869 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 59889-60728 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 60741-61151 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 61148-62098 bp Gene: cd09634:cas1 Type: universal Location: 62118-64388 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: NODE_1_length_231467_cov_4.874276

⇒Summary: seq-len = 231467 bp; # of CRISPR array = 1; # of cas gene = 3  (type II) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-6907 bp Zoom in on locus 1 x3 CRISPR array Location: 0-185 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 0-185 bp Num of repeats: 3 Spacers: s1-s2 Gene: pfam09827:cas2 Type: Subtype-II-C Location: 294-626 bp Gene: cd09720:cas1 Type: Subtype-II-C Location: 630-1562 bp Gene: unk Type: unknown Location: 1682-1990 bp Gene: unk Type: unknown Location: 2057-2581 bp Gene: cd09643:cas9 Type: Subtype-II-C Location: 2597-6907 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 0-185 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: NODE_313_length_268_cov_1.971831

⇒Summary: seq-len = 268 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 12-257 bp Zoom in on locus 1 x4 CRISPR array Location: 12-257 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 12-257 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 12-257 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: NODE_10_length_136491_cov_4.291243

⇒Summary: seq-len = 136491 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2-598 bp Zoom in on locus 1 x9 CRISPR array Location: 2-598 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 2-598 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2-598 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)