CRISPRone

CRISPRone report for SRR9713332

♦ Seq 1: NODE_64_length_812_cov_1.207398

⇒Summary: seq-len = 812 bp; # of CRISPR array = 0; # of cas gene = 1  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 551-811 bp Zoom in on locus 1 Gene: pfam09827:cas2 Type: universal Location: 551-811 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NODE_13_length_141252_cov_21.286741

⇒Summary: seq-len = 141252 bp; # of CRISPR array = 1; # of cas gene = 9  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 31640-46494 bp Zoom in on locus 1 x18 CRISPR array Location: 31640-32866 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 31640-32866 bp Num of repeats: 18 Spacers: s1-s17 Gene: cd09634:cas1 Type: universal Location: 33598-35868 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 35888-36838 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 36835-37245 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 37258-38097 bp Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 38117-39256 bp Gene: pfam12469:cas10 Type: Subtype-III-B Location: 39249-41051 bp Gene: mkCas0086:cmr1gr7 Type: Subtype-III-B Location: 41056-42465 bp Gene: unk Type: unknown Location: 42479-42958 bp Gene: cash17:cash17 Type: Type- Location: 42955-44382 bp Gene: unk Type: unknown Location: 44427-45206 bp Gene: unk Type: unknown Location: 45182-45808 bp Gene: cls000004:cas6 Type: other Location: 45826-46494 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 31640-32866 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NODE_12_length_148803_cov_23.222309

⇒Summary: seq-len = 148803 bp; # of CRISPR array = 1; # of cas gene = 3  (type II) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 907-10467 bp Zoom in on locus 1 x36 CRISPR array Location: 907-3632 bp Num of repeats: 36 Spacers: s1-s35 CRISPR array Location: 907-3632 bp Num of repeats: 36 Spacers: s1-s35 Gene: pfam09827:cas2 Type: Subtype-II-C Location: 3741-4073 bp Gene: cd09720:cas1 Type: Subtype-II-C Location: 4077-5009 bp Gene: unk Type: unknown Location: 5129-5437 bp Gene: unk Type: unknown Location: 5504-6028 bp Gene: cd09643:cas9 Type: Subtype-II-C Location: 6044-10354 bp antiRepeat Location: 10422-10467 bp Strand: - Match length: 26 bp Mismatch: 21 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 907-3632 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: NODE_2_length_480060_cov_22.507211

⇒Summary: seq-len = 480060 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 353604-357217 bp Zoom in on locus 1 Gene: pfam13280:WYL Type: other Location: 353604-354503 bp Gene: unk Type: unknown Location: 354500-355765 bp Gene: unk Type: unknown Location: 355773-356546 bp Gene: cd09692:cas5 Type: Subtype-I-B Location: 356549-357217 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)