CRISPRone

CRISPRone report for SRR9713334

♦ Seq 1: NODE_1_length_480581_cov_8.473242

⇒Summary: seq-len = 480581 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 354125-357738 bp Zoom in on locus 1 Gene: pfam13280:WYL Type: other Location: 354125-355024 bp Gene: unk Type: unknown Location: 355021-356286 bp Gene: unk Type: unknown Location: 356294-357067 bp Gene: cd09692:cas5 Type: Subtype-I-B Location: 357070-357738 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NODE_13_length_148726_cov_8.557237

⇒Summary: seq-len = 148726 bp; # of CRISPR array = 1; # of cas gene = 3  (type II) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 907-10390 bp Zoom in on locus 1 x35 CRISPR array Location: 907-3555 bp Num of repeats: 35 Spacers: s1-s34 CRISPR array Location: 907-3555 bp Num of repeats: 35 Spacers: s1-s34 Gene: pfam09827:cas2 Type: Subtype-II-C Location: 3664-3996 bp Gene: cd09720:cas1 Type: Subtype-II-C Location: 4000-4932 bp Gene: unk Type: unknown Location: 5052-5360 bp Gene: unk Type: unknown Location: 5427-5951 bp Gene: cd09643:cas9 Type: Subtype-II-C Location: 5967-10277 bp antiRepeat Location: 10345-10390 bp Strand: - Match length: 26 bp Mismatch: 21 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 907-3555 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NODE_14_length_141231_cov_8.418038

⇒Summary: seq-len = 141231 bp; # of CRISPR array = 1; # of cas gene = 9  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 31640-46494 bp Zoom in on locus 1 x18 CRISPR array Location: 31640-32866 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 31640-32866 bp Num of repeats: 18 Spacers: s1-s17 Gene: cd09634:cas1 Type: universal Location: 33598-35868 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 35888-36838 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 36835-37245 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 37258-38097 bp Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 38117-39256 bp Gene: pfam12469:cas10 Type: Subtype-III-B Location: 39249-41051 bp Gene: mkCas0086:cmr1gr7 Type: Subtype-III-B Location: 41056-42465 bp Gene: unk Type: unknown Location: 42479-42958 bp Gene: cash17:cash17 Type: Type- Location: 42955-44382 bp Gene: unk Type: unknown Location: 44427-45206 bp Gene: unk Type: unknown Location: 45182-45808 bp Gene: cls000004:cas6 Type: other Location: 45826-46494 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 31640-32866 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)