CRISPRone

CRISPRone report for SRR9713335

♦ Seq 1: NODE_6_length_320443_cov_17.149066

⇒Summary: seq-len = 320443 bp; # of CRISPR array = 1; # of cas gene = 10  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 30980-45554 bp Zoom in on locus 1 x14 CRISPR array Location: 30980-31926 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 30980-31926 bp Num of repeats: 14 Spacers: s1-s13 Gene: cd09725:cas2 Type: universal Location: 32374-32664 bp Gene: cd09634:cas1 Type: universal Location: 32658-34928 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 34948-35898 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 35895-36305 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 36318-37157 bp Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 37177-38316 bp Gene: pfam12469:cas10 Type: Subtype-III-B Location: 38309-40111 bp Gene: mkCas0086:cmr1gr7 Type: Subtype-III-B Location: 40116-41525 bp Gene: unk Type: unknown Location: 41539-42018 bp Gene: cash17:cash17 Type: Type- Location: 42015-43442 bp Gene: unk Type: unknown Location: 43487-44266 bp Gene: unk Type: unknown Location: 44242-44868 bp Gene: cls000004:cas6 Type: other Location: 44886-45554 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 30980-31926 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NODE_1_length_454277_cov_18.867747

⇒Summary: seq-len = 454277 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 346575-350188 bp Zoom in on locus 1 Gene: pfam13280:WYL Type: other Location: 346575-347474 bp Gene: unk Type: unknown Location: 347471-348736 bp Gene: unk Type: unknown Location: 348744-349517 bp Gene: cd09692:cas5 Type: Subtype-I-B Location: 349520-350188 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NODE_297_length_562_cov_0.948718

⇒Summary: seq-len = 562 bp; # of CRISPR array = 0; # of cas gene = 2  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3-560 bp Zoom in on locus 1 Gene: pfam09827:cas2 Type: universal Location: 3-266 bp Gene: cd09720:cas1 Type: universal Location: 270-560 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)