CRISPRone

CRISPRone report for SRR9713340

♦ Seq 1: NODE_133_length_12733_cov_4.532971

⇒Summary: seq-len = 12733 bp; # of CRISPR array = 1; # of cas gene = 3  (type II) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4274-11963 bp Zoom in on locus 1 x13 Gene: cd09643:cas9 Type: Subtype-II-C Location: 4274-8584 bp Gene: unk Type: unknown Location: 8600-9124 bp Gene: unk Type: unknown Location: 9191-9499 bp Gene: cd09720:cas1 Type: Subtype-II-C Location: 9619-10551 bp Gene: pfam09827:cas2 Type: Subtype-II-C Location: 10555-10887 bp CRISPR array Location: 10996-11963 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 10996-11963 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 10996-11963 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NODE_260_length_4846_cov_4.668336

⇒Summary: seq-len = 4846 bp; # of CRISPR array = 1; # of cas gene = 1  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3814-4845 bp Zoom in on locus 1 x5 CRISPR array Location: 3814-4131 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 3814-4131 bp Num of repeats: 5 Spacers: s1-s4 Gene: cd09725:cas2 Type: universal Location: 4579-4845 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 3814-4131 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NODE_6_length_60949_cov_8.032286

⇒Summary: seq-len = 60949 bp; # of CRISPR array = 0; # of cas gene = 9  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 46-12942 bp Zoom in on locus 1 Gene: cd09634:cas1 Type: universal Location: 46-2316 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 2336-3280 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 3283-3693 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 3706-4545 bp Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 4565-5704 bp Gene: pfam12469:cas10 Type: Subtype-III-B Location: 5697-7499 bp Gene: mkCas0086:cmr1gr7 Type: Subtype-III-B Location: 7504-8913 bp Gene: unk Type: unknown Location: 8927-9406 bp Gene: cash17:cash17 Type: Type- Location: 9403-10830 bp Gene: unk Type: unknown Location: 10875-11654 bp Gene: unk Type: unknown Location: 11630-12256 bp Gene: cls000004:cas6 Type: other Location: 12274-12942 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)