CRISPRone

CRISPRone report for SRR9713342

♦ Seq 1: NODE_4_length_264280_cov_11.173012

⇒Summary: seq-len = 264280 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 127233-130846 bp Zoom in on locus 1 Gene: pfam13280:WYL Type: other Location: 127233-128132 bp Gene: unk Type: unknown Location: 128129-129394 bp Gene: unk Type: unknown Location: 129402-130175 bp Gene: cd09692:cas5 Type: Subtype-I-B Location: 130178-130846 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NODE_11_length_158327_cov_10.239998

⇒Summary: seq-len = 158327 bp; # of CRISPR array = 1; # of cas gene = 10  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 143835-157780 bp Zoom in on locus 1 x5 CRISPR array Location: 143835-144152 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 143835-144152 bp Num of repeats: 5 Spacers: s1-s4 Gene: cd09725:cas2 Type: universal Location: 144600-144890 bp Gene: cd09634:cas1 Type: universal Location: 144884-147154 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 147174-148118 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 148121-148531 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 148544-149383 bp Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 149403-150542 bp Gene: pfam12469:cas10 Type: Subtype-III-B Location: 150535-152337 bp Gene: mkCas0086:cmr1gr7 Type: Subtype-III-B Location: 152342-153751 bp Gene: unk Type: unknown Location: 153765-154244 bp Gene: cash17:cash17 Type: Type- Location: 154241-155668 bp Gene: unk Type: unknown Location: 155713-156492 bp Gene: unk Type: unknown Location: 156468-157094 bp Gene: cls000004:cas6 Type: other Location: 157112-157780 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 143835-144152 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NODE_25_length_84531_cov_11.696932

⇒Summary: seq-len = 84531 bp; # of CRISPR array = 1; # of cas gene = 3  (type II) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 75212-83626 bp Zoom in on locus 1 x21 antiRepeat Location: 75212-75257 bp Strand: + Match length: 26 bp Mismatch: 21 bp Gene: cd09643:cas9 Type: Subtype-II-C Location: 75325-79635 bp Gene: unk Type: unknown Location: 79651-80175 bp Gene: unk Type: unknown Location: 80242-80550 bp Gene: cd09720:cas1 Type: Subtype-II-C Location: 80670-81602 bp Gene: pfam09827:cas2 Type: Subtype-II-C Location: 81606-81938 bp CRISPR array Location: 82047-83626 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 82047-83626 bp Num of repeats: 21 Spacers: s1-s20 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 82047-83626 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)