CRISPRone

CRISPRone report for SRR9713343

♦ Seq 1: NODE_8_length_177483_cov_7.012242

⇒Summary: seq-len = 177483 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 46623-50236 bp Zoom in on locus 1 Gene: cd09692:cas5 Type: Subtype-I-B Location: 46623-47291 bp Gene: unk Type: unknown Location: 47294-48067 bp Gene: unk Type: unknown Location: 48075-49340 bp Gene: pfam13280:WYL Type: other Location: 49337-50236 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NODE_27_length_84232_cov_7.216579

⇒Summary: seq-len = 84232 bp; # of CRISPR array = 1; # of cas gene = 10  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38583-52592 bp Zoom in on locus 1 x5 Gene: cls000004:cas6 Type: other Location: 38583-39314 bp Gene: unk Type: unknown Location: 39332-39958 bp Gene: unk Type: unknown Location: 39934-40713 bp Gene: cash17:cash17 Type: Type- Location: 40758-42185 bp Gene: unk Type: unknown Location: 42182-42661 bp Gene: mkCas0086:cmr1gr7 Type: Subtype-III-B Location: 42675-44084 bp Gene: pfam12469:cas10 Type: Subtype-III-B Location: 44089-45891 bp Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 45884-47023 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 47043-47882 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 47895-48305 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 48302-49252 bp Gene: cd09634:cas1 Type: universal Location: 49272-51542 bp Gene: cd09725:cas2 Type: universal Location: 51536-51826 bp CRISPR array Location: 52274-52592 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 52274-52592 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 52274-52592 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NODE_25_length_84531_cov_7.655038

⇒Summary: seq-len = 84531 bp; # of CRISPR array = 1; # of cas gene = 3  (type II) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 75212-83626 bp Zoom in on locus 1 x21 antiRepeat Location: 75212-75257 bp Strand: + Match length: 26 bp Mismatch: 21 bp Gene: cd09643:cas9 Type: Subtype-II-C Location: 75325-79635 bp Gene: unk Type: unknown Location: 79651-80175 bp Gene: unk Type: unknown Location: 80242-80550 bp Gene: cd09720:cas1 Type: Subtype-II-C Location: 80670-81602 bp Gene: pfam09827:cas2 Type: Subtype-II-C Location: 81606-81938 bp CRISPR array Location: 82047-83626 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 82047-83626 bp Num of repeats: 21 Spacers: s1-s20 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 82047-83626 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)