CRISPRone

CRISPRone report for SRR9713347

♦ Seq 1: NODE_27_length_84531_cov_17.295883

⇒Summary: seq-len = 84531 bp; # of CRISPR array = 1; # of cas gene = 3  (type II) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 907-9207 bp Zoom in on locus 1 x21 CRISPR array Location: 907-2485 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 907-2485 bp Num of repeats: 21 Spacers: s1-s20 Gene: pfam09827:cas2 Type: Subtype-II-C Location: 2594-2926 bp Gene: cd09720:cas1 Type: Subtype-II-C Location: 2930-3862 bp Gene: unk Type: unknown Location: 3982-4290 bp Gene: unk Type: unknown Location: 4357-4881 bp Gene: cd09643:cas9 Type: Subtype-II-C Location: 4897-9207 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 907-2485 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NODE_4_length_264280_cov_13.845389

⇒Summary: seq-len = 264280 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 133435-137048 bp Zoom in on locus 1 Gene: cd09692:cas5 Type: Subtype-I-B Location: 133435-134103 bp Gene: unk Type: unknown Location: 134106-134879 bp Gene: unk Type: unknown Location: 134887-136152 bp Gene: pfam13280:WYL Type: other Location: 136149-137048 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NODE_1_length_369247_cov_13.251937

⇒Summary: seq-len = 369247 bp; # of CRISPR array = 1; # of cas gene = 10  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 323598-337607 bp Zoom in on locus 1 x5 Gene: cls000004:cas6 Type: other Location: 323598-324329 bp Gene: unk Type: unknown Location: 324347-324973 bp Gene: unk Type: unknown Location: 324949-325728 bp Gene: cash17:cash17 Type: Type- Location: 325773-327200 bp Gene: unk Type: unknown Location: 327197-327676 bp Gene: mkCas0086:cmr1gr7 Type: Subtype-III-B Location: 327690-329099 bp Gene: pfam12469:cas10 Type: Subtype-III-B Location: 329104-330906 bp Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 330899-332038 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 332058-332897 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 332910-333320 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 333317-334267 bp Gene: cd09634:cas1 Type: universal Location: 334287-336557 bp Gene: cd09725:cas2 Type: universal Location: 336551-336841 bp CRISPR array Location: 337289-337607 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 337289-337607 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 337289-337607 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)