CRISPRone

CRISPRone report for SRR9713353

♦ Seq 1: NODE_122_length_13622_cov_5.584728

⇒Summary: seq-len = 13622 bp; # of CRISPR array = 0; # of cas gene = 9  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 178-13074 bp Zoom in on locus 1 Gene: cls000004:cas6 Type: other Location: 178-846 bp Gene: unk Type: unknown Location: 864-1490 bp Gene: unk Type: unknown Location: 1466-2245 bp Gene: cash17:cash17 Type: Type- Location: 2290-3717 bp Gene: unk Type: unknown Location: 3714-4193 bp Gene: mkCas0086:cmr1gr7 Type: Subtype-III-B Location: 4207-5616 bp Gene: pfam12469:cas10 Type: Subtype-III-B Location: 5621-7423 bp Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 7416-8555 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 8575-9414 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 9427-9837 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 9840-10784 bp Gene: cd09634:cas1 Type: universal Location: 10804-13074 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NODE_38_length_41650_cov_6.454622

⇒Summary: seq-len = 41650 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 10072-13685 bp Zoom in on locus 1 Gene: pfam13280:WYL Type: other Location: 10072-10971 bp Gene: unk Type: unknown Location: 10968-12233 bp Gene: unk Type: unknown Location: 12241-13014 bp Gene: cd09692:cas5 Type: Subtype-I-B Location: 13017-13685 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NODE_57_length_32591_cov_5.900940

⇒Summary: seq-len = 32591 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5-960 bp Zoom in on locus 1 x14 CRISPR array Location: 5-960 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 5-960 bp Num of repeats: 14 Spacers: s1-s13 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5-960 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)