CRISPRone

CRISPRone report for SRR9713355

♦ Seq 1: NODE_121_length_13968_cov_4.907856

⇒Summary: seq-len = 13968 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 32-279 bp Zoom in on locus 1 x4 CRISPR array Location: 32-279 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 32-279 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 32-279 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NODE_93_length_18613_cov_5.276916

⇒Summary: seq-len = 18613 bp; # of CRISPR array = 1; # of cas gene = 9  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4598-18614 bp Zoom in on locus 1 x6 Gene: cls000004:cas6 Type: other Location: 4598-5266 bp Gene: unk Type: unknown Location: 5284-5910 bp Gene: unk Type: unknown Location: 5886-6665 bp Gene: cash17:cash17 Type: Type- Location: 6710-8137 bp Gene: unk Type: unknown Location: 8134-8613 bp Gene: mkCas0086:cmr1gr7 Type: Subtype-III-B Location: 8627-10036 bp Gene: pfam12469:cas10 Type: Subtype-III-B Location: 10041-11843 bp Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 11836-12975 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 12995-13834 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 13847-14257 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 14260-15204 bp Gene: cd09634:cas1 Type: universal Location: 15224-17494 bp CRISPR array Location: 18226-18614 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 18226-18614 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 18226-18614 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NODE_12_length_58782_cov_5.311867

⇒Summary: seq-len = 58782 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 39100-42713 bp Zoom in on locus 1 Gene: pfam13280:WYL Type: other Location: 39100-39999 bp Gene: unk Type: unknown Location: 39996-41261 bp Gene: unk Type: unknown Location: 41269-42042 bp Gene: cd09692:cas5 Type: Subtype-I-B Location: 42045-42713 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: NODE_414_length_404_cov_4.355301

⇒Summary: seq-len = 404 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 14-404 bp Zoom in on locus 1 x6 CRISPR array Location: 14-404 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 14-404 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 14-404 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)